PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400006687 | ||||||||
Common Name | LOC102601100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 148aa MW: 15970.3 Da PI: 10.3397 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.9 | 1.2e-05 | 38 | 76 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq PGSC0003DMP400006687 38 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 76 7788999*********998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.28 | 26 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.49E-6 | 36 | 80 | No hit | No description |
SuperFamily | SSF47459 | 1.3E-11 | 36 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-10 | 40 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MPEAKRTSNT LETNKGPQNA PKKSRVDSRA SCPPFKVRKE KLGDRIAALQ QLVAPFGKTD 60 TASVLMEAIG YIKFLQNQVE TLSVPYMKSS RSKASRSLHG GGGEMNNEEM KRDLRSRGLC 120 LVPLTCLTYV TEGGGGVWPP PNFTGGT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400006687 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 7e-67 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006341970.1 | 1e-105 | PREDICTED: transcription factor bHLH110 | ||||
Refseq | XP_015071751.1 | 1e-105 | transcription factor bHLH110 isoform X2 | ||||
Swissprot | Q9SFZ3 | 7e-55 | BH110_ARATH; Transcription factor bHLH110 | ||||
TrEMBL | A0A3Q7GA48 | 1e-105 | A0A3Q7GA48_SOLLC; Uncharacterized protein | ||||
TrEMBL | M0ZWL1 | 1e-105 | M0ZWL1_SOLTU; Uncharacterized protein | ||||
TrEMBL | M0ZWL2 | 1e-104 | M0ZWL2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400009603 | 1e-105 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 4e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400006687 |
Entrez Gene | 102601100 |
Publications ? help Back to Top | |||
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