PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006612
Common NameLOC102600099
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 263aa    MW: 28324.3 Da    PI: 4.5644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006612genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.7e-173079255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           ykGVr++  +g+WvAeIr+p   + r +r +lg+f+  ++Aa  ++aa++kl+g
  PGSC0003DMP400006612 30 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDNSYDAAVVYDAAALKLYG 79
                          69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.92E-192989No hitNo description
PfamPF008475.3E-103079IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-193088IPR016177DNA-binding domain
SMARTSM003806.2E-303093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-283088IPR001471AP2/ERF domain
PROSITE profilePS5103221.2723087IPR001471AP2/ERF domain
PRINTSPR003671.2E-73142IPR001471AP2/ERF domain
PRINTSPR003671.2E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSTTSKKLIP ATSRKGCMRG KGGPENASCT YKGVRQRTWG KWVAEIREPN RGARLWLGTF  60
DNSYDAAVVY DAAALKLYGA EAKLNLPHLY SIPAQDQSQA QSQIQNSRPI TIMSPSLAPV  120
SATAPASVPA PPVPSVYNVA SPSTWSVGTD SSLYFNDHDF GISNFSANDI PSAFNLIDIN  180
KTADDHPDEF VVKNDNATNN NQSSQGLGGE MFRDLNMNLP EIDDSSIWEE AKATTSFQEA  240
VNDPGIGGYN LDDGLNFPPW CG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-173187360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006612
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342227.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLM0ZWD70.0M0ZWD7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000095060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.17e-39ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]