PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006474
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 859aa    MW: 91533.3 Da    PI: 5.5198
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006474genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-06835858226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           ++++C+ f+++G Ck G+ C + H+
  PGSC0003DMP400006474 835 GQRICK-FYESGRCKKGAACDYLHP 858
                           6899**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF552774.97E-1593157IPR003169GYF domain
CDDcd000721.73E-15105161No hitNo description
PROSITE profilePS5082913.925105158IPR003169GYF domain
SMARTSM004441.3E-9106160IPR003169GYF domain
Gene3DG3DSA:3.30.1490.403.4E-14107158IPR003169GYF domain
PfamPF022137.9E-10108149IPR003169GYF domain
SuperFamilySSF902294.4E-6833857IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.075833858IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001837857IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MNPDYESEGD DGEHNDKRKV EHPAPRCTRF SRRKLISSGS RVKEEGSIMA QCRMSGKRDA  60
CGTNILDKQG NQLTVEQAVD RSGSETSIAS LSTVNASSII SSETDKLWHY RDPTKRIQGP  120
FSVMQLRKWN TSGLFPPDMR IWTNHEHEDS VLLTNALKGL FHKESQMHDK TSSQSREPTS  180
LDSRTNVRWS ESATGSGGEC EKREAPGHLH NANYCSNGNT EFTRMNGLSP SFPRCVESLK  240
GNNSCSDKPQ LLSSPSSSQR EVILALPRQG KGHGTDKSRS VADYGTQNSR KSTLCHAQSN  300
SRNLDPSSGQ NQKSFTSNKC SINLDSGSSF ASATKSSDLF EQKGEMNLPD LPSPTPETSY  360
GDLEAQAAEK LLLLSSVIPV CGSDIHDLPS PTPISNSEAQ GAHAAENKES GPSNLPDSEA  420
RAGHVGENKE SGPSSLPIQE SGQRWSSASS PVVGGPQLHE IADEWGRSSP AAKPSTEEWD  480
SSLVSVSSLK PVETVGDHVA TPPSIADLLT AKPSTEEWDS GLVSVSSLKP AEAVGDHVVT  540
PASNADQLNH TSPSHPMSNF FDEPIEFSTL AEESVSDLLA EVDAMESQNQ NGMGSPTSAM  600
RCGEEMIPGC KTDCFIPIEE LSHTHDPVRS DDLSSTGDLQ LPCLSTVTDE TVGASRADAF  660
DPIRRSGGNS STSSEGETKS ADVLFSQGDV GSGIPAPCTS GIPAPCTTGI PAPCTTSQTT  720
AFSAMGRSTM FEGVTNGRGA APGNLSWGGP VQGYTNVGFG SNMGAAWGNS HMNRGAPFTG  780
NPVWDSQRRY AGERSGGPRD WALQGGESGF GRGRPSWNRQ QPYGGGGYSR PPPKGQRICK  840
FYESGRCKKG AACDYLHP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006474
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754422e-77HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340701.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
TrEMBLM0ZW150.0M0ZW15_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000093220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21811516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.15e-21nucleic acid binding;zinc ion binding;DNA binding
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]