PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006349
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 606aa    MW: 66854.9 Da    PI: 9.9951
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006349genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06564585526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C ff +   C+ G++C+F H+
  PGSC0003DMP400006349 564 PCVFFNKPKGCRNGSSCRFLHD 585
                           8********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.173559587IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-5561587IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4564586IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MTLKKSRKVS WAPGPDFCQV KHYRKEDCPS KVGSGSQLKQ THQSIDRSSS ERRYCLKKSK  60
ERLSSKSLAI WKCPPKFHLN EKWLVVAGEE SKEASKQEDR KMRVIEAVFP NRSAIPPNPY  120
NLSDLEQSYD DNQTPVIRTI PIEEEEVDVE VLTQTISRCL PNSPSSSVRT ITSQKLPDNG  180
KSLPEPLSTF PNARKPSSNS FLSKRPPSNV QSTPTYHSRC QNLKGSKQTQ VSPKLPVSYS  240
FVPRYQPTFK SIGTQTEIFP DQPANENHGA KYQTICENQN IPQLKSQVSG MAPAKHNPVT  300
ESPSTHDLTV AVATTVAALA KSQEQGSLIG TNLLVRLLLN PEEIPKLMNE RGIATNTAMS  360
RPEDLLLPLP RKKPDKVINN PINECQAPLA GSGPSFVPKP MANSAPLMMT KPETSMRSNL  420
VVEQGPPPSV ETANTTESKS LAHPTSDLNL ENIKKLVNKY RVLDNEGGKP SVNSELVSKY  480
GRTTLQPKLS ISPNVGHTSP SSSILTSHTP LQKDINYCKS LIKQHGEQYE FVVDESLQNT  540
NPHGTTWGAG LLKNQKPIPR SLTPCVFFNK PKGCRNGSSC RFLHDISGQK RSGGTSEGRD  600
SKRMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006349
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389740.0AC238974.1 Solanum tuberosum clone RHPOTKEY152M21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340938.10.0PREDICTED: zinc finger CCCH domain-containing protein 45-like
TrEMBLM0ZVP40.0M0ZVP4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000091460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1329244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.25e-07HB-other family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]