PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006347
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 326aa    MW: 35154.4 Da    PI: 9.7278
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006347genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-06284305526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C ff +   C+ G++C+F H+
  PGSC0003DMP400006347 284 RCVFFNEPRGCRNGSSCPFLHD 305
                           69*******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.568279307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001285306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPPAKHNPVT QNIPGFEGDL TVAIATAVAA LAKSQEQDSL IDTNLLVRLL LNPKEIPKLM  60
NDHGLATNAK TGAATIDSLV AAMSRPVDLP VPLPRTKPDK VIIKPINEYQ APHAGSGPIF  120
GPKPMAKSVP LTMTKPETSV KSNLVNEQRA PPHVGTANIR ESKSLAHPTS DLNLEKIKKL  180
INKYGVPDNV GGKPLVNSEL VPSSCSKYDV VSPNVGHTSP FSSMTSPTPL HKDINYCKSL  240
IKQHGEICES AVDDRLQNTN PRGNYTRVPG LLMNQKPIQC SLTRCVFFNE PRGCRNGSSC  300
PFLHDISGQK RSGGILEARD FKRMS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006347
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-147HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340722.10.0PREDICTED: zinc finger CCCH domain-containing protein 68
TrEMBLM0ZVP30.0M0ZVP3_SOLTU; Uncharacterized protein
STRINGSolyc02g084200.1.10.0(Solanum lycopersicum)
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]