PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400006342 | ||||||||
Common Name | BBR/BPC2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 286aa MW: 31733.6 Da PI: 8.4574 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 289.4 | 1.5e-88 | 1 | 285 | 32 | 301 |
GAGA_bind 32 iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlse 116 +aerda+irern+al e+k a+aerdma lqrd+alaern+ + er+++++al l++ s++ +++g ++ sg+k+i + qq+ + PGSC0003DMP400006342 1 MAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNALIQERNDAIAALRLQDSSTNdnnmVPDSPGNGTESGAKHIYNQQQMYR 89 78**************************************************9998887776654344566777777787776666433 PP GAGA_bind 117 .......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak...kkkkksekskkkvkkesader.....skae 190 +ed++++ + +++ +i ++++ ke++++k+ + +++ k + + ++ ++++++ + ++ + + + ++ PGSC0003DMP400006342 90 ttaeaahGSMEDPSAGYLKDTDTSEAKIPKKVKRPKESRHNKQAKIPRVGKIGTDNlsmQVIATTSDDWANLQEMDS--DkegdtQLTS 176 34555556777777776666666777777777777777666666666666655554333333333444433333222..1233324445 PP GAGA_bind 191 kksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279 +k+ +l+ ++++Des++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL++Laa+Gydl PGSC0003DMP400006342 177 WKD-NLGF-QINFDESAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRLAAQGYDL 263 543.5555.688***************************************************************************** PP GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301 s p+DLkdhWAkHGtn++ t++ PGSC0003DMP400006342 264 SIPLDLKDHWAKHGTNRYSTLK 285 ******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.6E-87 | 1 | 285 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 3.8E-78 | 1 | 285 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MAERDAAIRE RNMALEERKR AFAERDMAML QRDAALAERN ALIQERNDAI AALRLQDSST 60 NDNNMVPDSP GNGTESGAKH IYNQQQMYRT TAEAAHGSME DPSAGYLKDT DTSEAKIPKK 120 VKRPKESRHN KQAKIPRVGK IGTDNLSMQV IATTSDDWAN LQEMDSDKEG DTQLTSWKDN 180 LGFQINFDES AMPVPVCSCT GTPQPCYKWG HGGWQSACCT TTISMYPLPQ ISNKRYSRVG 240 GRKMSGGAFS KLLNRLAAQG YDLSIPLDLK DHWAKHGTNR YSTLK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400006342 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001275213.1 | 0.0 | barley B recombinant-like protein D-like | ||||
Refseq | XP_015159803.1 | 0.0 | PREDICTED: barley B recombinant-like protein D-like isoform X1 | ||||
TrEMBL | H1ZN96 | 0.0 | H1ZN96_SOLTU; GAGA-binding transcriptional activator | ||||
STRING | PGSC0003DMT400009137 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8062 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.2 | 4e-77 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400006342 |
Entrez Gene | 102584222 |