PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400005772 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ARR-B | ||||||||
Protein Properties | Length: 670aa MW: 74026.5 Da PI: 7.262 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.5 | 1.3e-27 | 211 | 263 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r++W+ eLH++Fv av qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl PGSC0003DMP400005772 211 ARVVWSIELHRKFVAAVGQL-GIEKAVPKRILDLMNVDGLTRENVASHLQKYRL 263 79******************.********************************8 PP | |||||||
2 | Response_reg | 81 | 4e-27 | 28 | 136 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 vl vdD+p+ ++ll +l+k +y +v+++++++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+++ +++ PGSC0003DMP400005772 28 VLAVDDDPICLKLLDGLLRKCQY-QVTTTSQARMALKMLRENRdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDTKLVR 114 799********************.***************999889*******************87754.558**************** PP HHHHTTESEEEESS--HHHHHH CS Response_reg 88 ealkaGakdflsKpfdpeelvk 109 + ++ Ga d+l+Kp+ +eel++ PGSC0003DMP400005772 115 KGIDHGACDYLVKPVRIEELRN 136 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 4.1E-158 | 2 | 659 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 5.12E-36 | 25 | 152 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.2E-43 | 25 | 160 | No hit | No description |
SMART | SM00448 | 8.0E-33 | 26 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.897 | 27 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.6E-24 | 28 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.23E-29 | 29 | 142 | No hit | No description |
PROSITE profile | PS51294 | 12.655 | 207 | 266 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-18 | 207 | 267 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 207 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-23 | 211 | 263 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MTVEEIRGNM GGGERGNNYD NFPIGMRVLA VDDDPICLKL LDGLLRKCQY QVTTTSQARM 60 ALKMLRENRD RFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANSDT KLVRKGIDHG 120 ACDYLVKPVR IEELRNIWQH VIRKKKVEPK SQSKSNDQDK SYQVSGESGR GQSPTGNVDQ 180 NGKCNKKRKD EEDENDENGN DDEDPTTQKR ARVVWSIELH RKFVAAVGQL GIEKAVPKRI 240 LDLMNVDGLT RENVASHLQK YRLYLKRINS VQTQQANMVA ALGGRDYVRM GSLDGLGDFR 300 TLGGSGRYTH AALSSYSSGG MLGRLNSAAG LSVRNLAASQ LLQPSHGQNL SNSVNAFTKL 360 NPNIPPASQN ASLFQGIPAS LELDQLQQSK SSAHIPLDES RLLTAEVLGC SNNSLSNVPN 420 IPMLLQGNPQ QPLTGGGFGN QHSQNMTPFS SDSFNTGVNG SSNFLEHGRC NENWQNSIQL 480 SKFQSNSFPL TESFINSHLP QNSVREATTH LQNSPLDFTS TTSVSPPFED SRGEIQYRQS 540 MAGAVQSMNQ TPSQAWADNK QHYSHNSNNT FGNNLRSQVP NDGNMASLSH SMNQSNENFG 600 RRMDMSLIGR SSGGSSTLVQ QTEHEKLTLD SRTRSNEDYL LEPTKQQVGF SPQGYDSLDD 660 LMTAMKRRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-24 | 206 | 269 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400005772 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006343681.1 | 0.0 | PREDICTED: two-component response regulator ORR24-like | ||||
Swissprot | B8AEH1 | 1e-139 | ORR23_ORYSI; Two-component response regulator ORR23 | ||||
TrEMBL | M0ZUD2 | 0.0 | M0ZUD2_SOLTU; Two-component response regulator | ||||
STRING | Solyc07g005140.2.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-119 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400005772 |
Publications ? help Back to Top | |||
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