PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005713
Common NameLOC102584069
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 493aa    MW: 54318.8 Da    PI: 4.6211
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005713genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.4e-36181092102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d+++++++sws+++nsfvvl+  efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g 
  PGSC0003DMP400005713  18 FLNKTYDMVDDPSTDSVVSWSKSNNSFVVLNVPEFARDILPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGY 97 
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll++i r+k 
  PGSC0003DMP400005713  98 KHLLKSISRRKP 109
                           *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3810102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-6014107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3414107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.0E-3118107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-201841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-205668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDGVHEAPVA GNSSSPPFLN KTYDMVDDPS TDSVVSWSKS NNSFVVLNVP EFARDILPKY  60
FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGYKHL LKSISRRKPP QVQGHQQTTS  120
KVPNASVASC VEVGKFGIEE EVERLKRDKD VLMQELVKLR QQQQETDHQL VTVGQRVQLM  180
ENRQQQMMSF LAKAMQSPGF VAQLVHQQNG NNRHITGLNK KRRLPEQSEE NVACNPVNAL  240
QDGQVVRYQP SMTEAAKVLQ QQILKINASG RLDNRLNTND CLTNNPLPPQ NSLDSSGASS  300
CISSVTLSEV MSTSSQPNLM SDSGFPFNSC SSIISETQSS TTVVPGEANI PVLPEADALN  360
SQAVHDLPEF SHILGVTDLD LNMSETGNVP DIDTAQGILD GLTTIVSDEF SANTDGDVLL  420
DDMPKLPAIN DIFWDQILSA TPASPLTGDT DEIGSLVVEE DFLGVQESDW DKLKHMHHLT  480
EQMGLLSSVA QI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-27910711120Heat shock factor protein 1
5d5u_B1e-27910720129Heat shock factor protein 1
5d5v_B1e-27910720129Heat shock factor protein 1
5d5v_D1e-27910720129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005713
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347585.10.0PREDICTED: heat stress transcription factor A-1
SwissprotQ84T611e-148HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLM0ZU870.0M0ZU87_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000081990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-135heat shock factor 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]