PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005488
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 601aa    MW: 66465.8 Da    PI: 8.6043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005488genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.1e-1357114448
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.............TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg.............kgRtlkqcksrwqkyl 48 
                           WT+eEd ll ++v+++ g++Wk+I +t+              +gRt+ qc +rwqk+l
  PGSC0003DMP400005488  57 WTEEEDNLLTEVVERFKGRNWKKIGKTIYsvmlytfqlaeclNGRTDVQCLHRWQKVL 114
                           *******************************************************986 PP
2Myb_DNA-binding60.92.7e-19120166148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g+WT+eEd+l++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
  PGSC0003DMP400005488 120 KGPWTKEEDDLIIELVEKHGCKKWSNIANSLP-GRIGKQCRERWHNHL 166
                           79******************************.*************97 PP
3Myb_DNA-binding54.13.7e-17172216147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +++WT++E++ l ++++++G++ W++Iar ++ gRt++ +k++w++ 
  PGSC0003DMP400005488 172 KDAWTEQEELVLCHYHQLYGNK-WAKIARFLP-GRTDNAIKNHWNST 216
                           679*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.68447114IPR017930Myb domain
SMARTSM007174.7E-753116IPR001005SANT/Myb domain
SuperFamilySSF466892.76E-1256124IPR009057Homeodomain-like
PfamPF002496.3E-1057114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-1957126IPR009057Homeodomain-like
CDDcd001674.30E-1157114No hitNo description
PROSITE profilePS5129431.635115170IPR017930Myb domain
SuperFamilySSF466892.84E-32117213IPR009057Homeodomain-like
SMARTSM007172.2E-17119168IPR001005SANT/Myb domain
PfamPF002491.1E-18120166IPR001005SANT/Myb domain
CDDcd001678.76E-17122166No hitNo description
Gene3DG3DSA:1.10.10.603.1E-27127173IPR009057Homeodomain-like
PROSITE profilePS5129421.194171221IPR017930Myb domain
SMARTSM007171.7E-15171219IPR001005SANT/Myb domain
PfamPF002495.2E-15172216IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-22174221IPR009057Homeodomain-like
CDDcd001671.40E-11174214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MIQVKEEAPT LDIGGFISCS SLSDSSYEAS TPRCSSEPGS SCRRSSGPTK RSSQAGWTEE  60
EDNLLTEVVE RFKGRNWKKI GKTIYSVMLY TFQLAECLNG RTDVQCLHRW QKVLNPELVK  120
GPWTKEEDDL IIELVEKHGC KKWSNIANSL PGRIGKQCRE RWHNHLDPTI TKDAWTEQEE  180
LVLCHYHQLY GNKWAKIARF LPGRTDNAIK NHWNSTLKKR LNLNLLSRLV PDIKSEGSPD  240
FSTHKKNLEI KKHPAQAHNA VTVFLSEQTG VGNAADACST DLRIGSANSP QNGLHKGTSS  300
FGACKSSEQK ARDLIKQFGG IQFGKGEILP IGETDKQCQS TLSVTKISYP LLDSSLNVPL  360
DPSHNTRWSS SQVEAVRPTS FGSMYESPKR SRYDAVNDPD HDFLSLSLAA FTEVSHGNKK  420
NKTYDTQSSL ALNQPGRLYY EPPKVKDLMI SSMDENLSKD NFIGQHHGHP LCSTPPSLKL  480
TVSANGSSPE SVLRNSAMSY TKTPSIIRKK TSRIAEASGH SSCTGSTTPM HFLESVPDRE  540
DSSNLKDRIS GCKRSVSGKS LGRRLEYAFD MEWDSSRSCT PVSAVPPCGL TLGANTMLTP  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-61572219159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-61572219159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385390ESPKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005488
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358883.10.0PREDICTED: transcription factor MYB28-like
RefseqXP_006358884.10.0PREDICTED: transcription factor MYB28-like
TrEMBLM0ZTQ20.0M0ZTQ2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000078990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103932025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.17e-73Homeodomain-like protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]