PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005485
Common NameLOC102581907, LOC102593248, PGSC0003DMG400012105
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 318aa    MW: 35023.9 Da    PI: 4.6792
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005485genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.7e-36251162102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d++++elisw+++g++f+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+
  PGSC0003DMP400005485  25 FLTKTYQLVDDSAMDELISWNDDGTTFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGE 104
                           9*****************************************************************99.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k ll++i+r+k 
  PGSC0003DMP400005485 105 KGLLRDIQRRKI 116
                           *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-3716108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.6E-5821114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3622114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1702.0E-4183213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVPSSIEHSG ESASGENQRS LPTPFLTKTY QLVDDSAMDE LISWNDDGTT FIVWKPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDCF RRGEKGLLRD IQRRKISPAC  120
TVVSAVVAPA VAVNAAQAVT VAVAPAVRMV SSSNSGDEQV LSSNSSPAAT AAAMLRTTTC  180
TTTQELIEEN ERLRKENAQL NQELNRLRSL CNNVYNLMSN YSVNPADIPA RIPEGRALEL  240
LDGSGAAFTA AEEDISPRLF GVSIGVKRVK RSNEEESDTV EDQDQVQPHG SDMESEPLDS  300
GSAHHDDQPW IYRLDLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-252511720123Heat shock factor protein 1
5d5u_B1e-252511429129Heat shock factor protein 1
5d5v_B1e-252511429129Heat shock factor protein 1
5d5v_D1e-252511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005485
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-149HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358879.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_006368078.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-98HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLM1AVU50.0M1AVU5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000078950.0(Solanum tuberosum)
STRINGPGSC0003DMT4000315530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.17e-92HSF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]