PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400005473 | ||||||||
Common Name | LOC102579355 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 198aa MW: 22334.4 Da PI: 5.0963 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 189.6 | 2.1e-58 | 1 | 182 | 193 | 374 |
GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 +L+vk+gE++aVn+vlq+hrll +s +++L l++s++P+++ ++eqea+hn++s+ +r++++l+yy+a+fds+ +lp +s + PGSC0003DMP400005473 1 MLHVKEGESVAVNCVLQMHRLLYDSSGGIL--RDFLGLIRSTNPTIILMAEQEAEHNEPSLEARLVNSLRYYAAVFDSIGFSLPLDSPA 87 79*******************966655444..79******************************************************* PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpL 367 rik+E+ ++r+i+n++aceg++r+erhe ++kWr+ +e+ GF+ ++e++ q ++ll++++ + yrv +++++l+l W d+pL PGSC0003DMP400005473 88 RIKIEEL-FARDIRNIIACEGRDRTERHECFGKWRKLMEQGGFRCTGITERELFQSQMLLKMYSCEDYRVTkqgNDDAALTLSWLDQPL 175 *****98.********************************************************888***94445589999******** PP GRAS 368 vsvSaWr 374 +vSaW+ PGSC0003DMP400005473 176 CTVSAWT 182 ******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 23.582 | 1 | 159 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.0E-56 | 1 | 182 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MLHVKEGESV AVNCVLQMHR LLYDSSGGIL RDFLGLIRST NPTIILMAEQ EAEHNEPSLE 60 ARLVNSLRYY AAVFDSIGFS LPLDSPARIK IEELFARDIR NIIACEGRDR TERHECFGKW 120 RKLMEQGGFR CTGITERELF QSQMLLKMYS CEDYRVTKQG NDDAALTLSW LDQPLCTVSA 180 WTPIDAAGSS SSYYQPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-25 | 4 | 181 | 197 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400005473 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358871.1 | 1e-141 | PREDICTED: scarecrow-like protein 28 | ||||
Swissprot | Q9CAN3 | 1e-68 | SCL28_ARATH; Scarecrow-like protein 28 | ||||
TrEMBL | M0ZTN7 | 1e-146 | M0ZTN7_SOLTU; Uncharacterized protein | ||||
TrEMBL | M0ZTN8 | 1e-139 | M0ZTN8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400007879 | 1e-140 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 5e-71 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400005473 |
Entrez Gene | 102579355 |
Publications ? help Back to Top | |||
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