PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005224
Common NameLOC102579405
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 251aa    MW: 27918.9 Da    PI: 4.2571
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005224genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.9e-191969155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          s y+GVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aaka +aa  +l+g
  PGSC0003DMP400005224 19 SLYRGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAAKAFDAALFCLRG 69
                          57*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-201978IPR016177DNA-binding domain
PROSITE profilePS5103221.7992077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-282078IPR001471AP2/ERF domain
PfamPF008472.4E-112069IPR001471AP2/ERF domain
SMARTSM003801.2E-312083IPR001471AP2/ERF domain
PRINTSPR003678.9E-102132IPR001471AP2/ERF domain
CDDcd000185.13E-282179No hitNo description
PRINTSPR003678.9E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVKPNSKDTE FSPSSSSSSL YRGVRKRKWG KWVSEIRLPN SRERIWLGSY DTPEKAAKAF  60
DAALFCLRGK GANFNFPENP PEIMNGRSMT PSEIQSAAAQ FANNTEPELI RVGPRENSDL  120
SSSSSEIFLA ESPSVSVSDR VESEKTEITL GNDFINMYRV ESPVSGRVES EKTEMSLDNG  180
FMDMFSSLGT VNDMSDFGIF PGFDDLSGEF FIPPPSPQPS QMPNLESLEE ENYLNYDGFQ  240
SQGTSFLWNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1521781573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005224
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345254.10.0PREDICTED: ethylene-responsive transcription factor ERF017
TrEMBLM0ZT431e-180M0ZT43_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000075110.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-50ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]