PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005216
Common NameLOC102601579
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 426aa    MW: 45207.4 Da    PI: 8.3866
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005216genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-11426225
                          -S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                          + e+Cr+f+r G C+yG+rCkF H
  PGSC0003DMP400005216  4 RKEPCRNFMR-GSCQYGERCKFLH 26
                          789*******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.737229IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6328IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-9426IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6429IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-8629IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MPPRKEPCRN FMRGSCQYGE RCKFLHAAQQ QPKPNPFGFG SQSSNFQNTN MQQTKSNPFG  60
FGVQSNSQPR GSSDLGLKQN QYKPFENKWT RSATTNSSSS RQTDNQPVAP NHTCTDAESC  120
RRQIVEDFNN EKPLWLLTCY GHRKNGPCDI TGDVSYEELR AAAYDDAKRG QSLMSIVERE  180
RSLVNSKVAE FENLLRNPYA STSTSAPNAQ SPFPGGIPSA SLSAQSPFPG AAPSASSPFP  240
GASLSAQSPF PGAAPNALSS AQSSFPPSAS SFSQLGTILN TGTSTPPTST FGQPNLPGNS  300
FKTSNSSGAN AFSFGNTSAS GSFGFGTQVS TQSCQNPSTP SNIFASSGRN LFSTSTTSPH  360
FANPSGGQLP TPSQGGFPVT ASPVSINLTS TASTEDFSGD NSIWTKKEWK IGEIPEEAPP  420
DRYVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005216
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8987750.0AB898775.1 Nicotiana benthamiana NbCG1b mRNA for nuclear pore complex protein CG1b, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345234.10.0PREDICTED: zinc finger CCCH domain-containing protein 16
TrEMBLM0ZT360.0M0ZT36_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000075020.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94392022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-64C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]