PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004922
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 130aa    MW: 14562.3 Da    PI: 8.4666
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004922genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.4e-105880527
                          --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                           C++f rtG+C+yGd+Ck+ H++
  PGSC0003DMP400004922 58 VCNHFVRTGYCQYGDSCKYYHPK 80
                          6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.95E-14453No hitNo description
PfamPF062209.9E-8538IPR013085Zinc finger, U1-C type
SMARTSM003564.1E-55380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2065381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-85681IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-85880IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-75880IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MPLGKYNCDY CDKEFQDTAA ARRRHLQGVQ HQRAKALWYD SLRNPQLFND PDSFGKGVCN  60
HFVRTGYCQY GDSCKYYHPK QNSQTVNQTG LPPGDVFREK AGASLGNLPP SLRPPPEGGY  120
PPLPFVEWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004922
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-58HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344810.19e-89PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ0JP117e-45C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLM0ZSG36e-92M0ZSG3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000070911e-92(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120081821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.13e-30C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]