PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004904
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 313aa    MW: 35984.8 Da    PI: 6.0331
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004904genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.91.3e-131493986
              trihelix 39 rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86
                          +ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++d ++
  PGSC0003DMP400004904  1 MERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtSCRVVENQKLLDTMD 49
                          799******************************669**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-10275No hitNo description
Gene3DG3DSA:1.10.601.105.4E-4137281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MERGFYVSPQ QCEDKFNDLN KRYKRVNDIL GKGTSCRVVE NQKLLDTMDH LSPKMKEEVK  60
KLLNSKHLFF REMCAYHNSC GHNGGTGGGA SGSGVANPQT HQNQSEQQQR CLHSSENTNA  120
RIGASLVEGP KMPKGASGEN DEENEDEEDE DEDEEDDDDE VSGARGHDHD HQSHGEEDDD  180
MERSRKRQRK LGASSPIVQQ LSTELANVVQ DRGRSPLEKM QWMKTKMIQL EEQHVSYLCQ  240
AFELQKQRLK WKKFISKKER EMERDKLINE RKKLENERMV LLLKQKELEL LDYHQHHPNN  300
NNRNSDPSSV TG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004904
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161543.10.0PREDICTED: nucleomorphin
TrEMBLM0ZSE70.0M0ZSE7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000070600.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.18e-45sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]