PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004903
Common NameLOC102600206
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 534aa    MW: 57983 Da    PI: 6.6707
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004903genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.22.1e-18147233186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           +W++  + +L+ea+ e+  +l+rg+l++ +Weev++ +  r ++ ++s +qCk+k +nl+kryk ++++++++   + s++p+f+q+e
  PGSC0003DMP400004903 147 EWSDTAIACLLEAYMEKFVQLNRGNLRGRDWEEVAAMVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GLTISHWPWFKQME 233
                           5*************************************767778899************************98.88999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.1E-21145235No hitNo description
Gene3DG3DSA:3.40.1160.108.4E-68281526IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536336.28E-54287526IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.571287527IPR015963Uridylate kinase, bacteria
PRINTSPR004742.0E-5289303IPR001057Glutamate/acetylglutamate kinase
CDDcd042541.59E-110290527No hitNo description
PfamPF006961.0E-23291506IPR001048Aspartate/glutamate/uridylate kinase
PRINTSPR004742.0E-5433460IPR001057Glutamate/acetylglutamate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0006561Biological Processproline biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MASCDDDFSL LGDDNAAVAV TPTTTTTANP TYHHQPFSSV RYKPVQIHPP PISAGSPKNI  60
SGDDEDGDGY SDNNAQSYHI GMNPYENDSI PFENDTNVNR SRGKLSNDKR ADREDIGDNG  120
TPYSYKRSKI SSSSGSGSGE YRKDREEWSD TAIACLLEAY MEKFVQLNRG NLRGRDWEEV  180
AAMVSERCEK QSKSVEQCKN KVDNLKKRYK LERHRMSNGG LTISHWPWFK QMEQIVGNSV  240
SVKATSEEDK AIVPVNNSST GRQSKRYGTA VPSPSGQIVK AKSSMSPRWR RVVLKISGAA  300
LAGMTPNTND ANNIDPKVAT LVATEVSIAC RLGIEVAIVV GGRNFFCGDT WVTSTGLDRC  360
TAYQIGMMAT LMNSILLQSA LEKVGVQTRV QSAFNMPELT EPYSRQRAMR HLEKGRVVIF  420
GGIGAGTGNP LFSTDTVAAL RASEIHADAV LKATNVDGVY VCDAQNNNVV AEHISFRELV  480
SGGDSPLDLM AVTLCEENAI PVVIFNLHGP GNISRALCGE QVGTLIDQTG RVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-562895269239Uridylate kinase
3ek5_B2e-562895269239Uridylate kinase
3ek5_C2e-562895269239Uridylate kinase
3ek5_D2e-562895269239Uridylate kinase
3ek5_E2e-562895269239Uridylate kinase
3ek5_F2e-562895269239Uridylate kinase
3ek6_A2e-562895269239Uridylate kinase
3ek6_B2e-562895269239Uridylate kinase
3ek6_C2e-562895269239Uridylate kinase
3ek6_D2e-562895269239Uridylate kinase
3ek6_E2e-562895269239Uridylate kinase
3ek6_F2e-562895269239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004903
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341185.10.0PREDICTED: uncharacterized protein LOC102600206
TrEMBLM0ZSE60.0M0ZSE6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000070590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]