PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004825
Common NameLOC107059499
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 244aa    MW: 28275.8 Da    PI: 8.3764
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004825genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.7e-2070122456
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           + +++++qle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k
  PGSC0003DMP400004825  70 KKRLSSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 122
                           55699***********************************************9 PP
2HD-ZIP_I/II120.11.1e-3869160293
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           kk+rls++q+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+ yd +++e+++L++ev +Lr+ 
  PGSC0003DMP400004825  69 KKKRLSSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQDYDVVSREKQKLQDEVLALRAI 157
                           9**************************************************************************************88 PP

           HD-ZIP_I/II  91 lke 93 
                           lke
  PGSC0003DMP400004825 158 LKE 160
                           875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.1E-1949126IPR009057Homeodomain-like
PROSITE profilePS5007117.31364124IPR001356Homeobox domain
SMARTSM003893.6E-1766128IPR001356Homeobox domain
CDDcd000861.99E-1669125No hitNo description
PfamPF000463.6E-1769122IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-2171131IPR009057Homeodomain-like
PRINTSPR000317.4E-695104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000317.4E-6104120IPR000047Helix-turn-helix motif
PfamPF021832.2E-7124158IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDWNGNIRPF VSRPVIDNSL NFLYNYNYDQ YQGMEMKHAM QTQHGGVQVP TMDNNNNNNF  60
VLNQHQLDKK KRLSSDQLES LENSFQEEIK LDPDRKMKLA KELGLQPRQI AVWFQNRRAR  120
WKAKQLERLY DSLKQDYDVV SREKQKLQDE VLALRAILKE QATKKQVNST VYTEISGEET  180
VESTSMPSSN KTITRGITIS NHQNNNNIMN NNNIAECSYV FNNVVDGLNP VMPPYWATLP  240
TYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004825
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-179HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161550.10.0PREDICTED: putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR01e-54ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLM0ZS810.0M0ZS81_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000069490.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-56homeobox 51
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  3. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]