PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004713
Common NameLOC102594739
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 312aa    MW: 34469.9 Da    PI: 6.9606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004713genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.000182072451255
                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  PGSC0003DMP400004713 207 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 245
                           6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.82E-7191249No hitNo description
PROSITE profilePS5088811.566195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-8205253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-11205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAGNPSNNWW NNMLMNTSMH PHDSHELFSS TTTTNQHFYG SSNFLADNNP SQDHLPRSWS  60
QLLLSGLSCD QEKPDISDHF QHQYKKLENW EEIQNLNSIH NNNNIPSNSS FRVPFFDVKP  120
EELVSQGLYT NYHQDLSPAS SCVTTNLNHN NIFNFSSSPA NKITNNNKVV EVKHQDHSSE  180
SNSTNSGGVT KKARVQHSSA QPSLKVRKEK LGDRITALHQ LVSPFGKTDT ASVLSEAIGY  240
IRFLQAQIQA LSSPYMGNVA GSMNHTQQQS ADLRSRGLCL VPISCTQHVG SDNNNTVGDY  300
WAPALGGGGY L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004713
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-172HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343090.10.0PREDICTED: transcription factor bHLH68-like
TrEMBLM0ZRY80.0M0ZRY8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000067830.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15192247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-48bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]