PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004686
Common NameLOC102583689
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 249aa    MW: 26832.8 Da    PI: 7.5047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004686genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-1768116355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+ +++g
  PGSC0003DMP400004686  68 YRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAAVSIKG 116
                           9****998.**********843...6*********************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-3166126No hitNo description
SMARTSM003806.7E-3767130IPR001471AP2/ERF domain
PROSITE profilePS5103223.36767124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3167125IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2167125IPR016177DNA-binding domain
PRINTSPR003671.9E-106879IPR001471AP2/ERF domain
PfamPF008471.1E-1168114IPR001471AP2/ERF domain
PRINTSPR003671.9E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MAEVEVQISE TESSSNTNTS VSSSSSSLSA DSMHKSVFDS SNKLPKGKKR PTKKQKAITN  60
SESRHQIYRG VRMRSWGKWV SEIREPRKKS RIWLGTYPTA EMAARAHDVA AVSIKGKSAI  120
LNFPHLIDSL PRPLSNSPRD VQAAAAKAAS MRDPPSSASS SSSSSSSSSS TTSTGSEELC  180
EIIELPNLAE SDDSKTELRP SDSVEGLLYS PWWADHSTDF CGYFLEQSAA GAGESLISCS  240
FETLKWAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-20651251273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004686
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343055.11e-180PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ9LYD31e-53DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLM0ZRX51e-179M0ZRX5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000067511e-179(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]