PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004457
Common NameLOC102600649
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 387aa    MW: 42796.9 Da    PI: 5.1485
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004457genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.1e-08299339954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  PGSC0003DMP400004457 299 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 339
                           69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-14295350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-11298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-5299339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-4312344No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MENLDWNETP FSFGSSFDPI HVISNWNMPQ RQEAANRLAA DSMAAKAGTA DLTRDCTDVG  60
FSSSPILNMP NNYISDNNPL GLMSDFGVEI VKPATGLISN TVSLESIDCL LSATTTNNTD  120
TSVEDDGMSV IFADSNSLWN SGESAGINPP AGYQQLLTCL PTDHKILEEE QNQRKRKSYE  180
LDEAVSQSSL ANSSNEFNLF QSNSLTGNFQ LISEKQSKSK KARLIETNKR PSSSNINFQQ  240
ASSSVSSIDQ EPDPEAIAQM KEMIYRAAAF RPVDFGAEVL EKPKRKNVKI STDPQTVAAR  300
QRRERISERI RVLQRLVPGG SKMDTASMLD EAANYLKFLR SQVKALEVIG QKQDPFTSIV  360
PFNYPIPMQL PHFPLQNPNQ IHRPKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177QRKRKS
2299304RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004457
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384470.0AC238447.1 Solanum lycopersicum chromosome 3 clone C03HBa0079K08, complete sequence.
GenBankAC2384650.0AC238465.1 Solanum lycopersicum chromosome 3 clone C03HBa0241F16, complete sequence.
GenBankEU1247300.0EU124730.2 Solanum lycopersicum chromosome 3 clone C03HBa0001E24, complete sequence.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343023.10.0PREDICTED: transcription factor bHLH87
RefseqXP_006343024.10.0PREDICTED: transcription factor bHLH87
SwissprotQ8S3D26e-80BH087_ARATH; Transcription factor bHLH87
TrEMBLM0ZRC90.0M0ZRC9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000064530.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.16e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]