PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400004456 | ||||||||
Common Name | LOC102600649 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 387aa MW: 42796.9 Da PI: 5.1485 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.4 | 5.1e-08 | 299 | 339 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L PGSC0003DMP400004456 299 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 339 69******************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.332 | 290 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.85E-14 | 295 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-13 | 296 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-11 | 298 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-5 | 299 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.10E-4 | 312 | 344 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MENLDWNETP FSFGSSFDPI HVISNWNMPQ RQEAANRLAA DSMAAKAGTA DLTRDCTDVG 60 FSSSPILNMP NNYISDNNPL GLMSDFGVEI VKPATGLISN TVSLESIDCL LSATTTNNTD 120 TSVEDDGMSV IFADSNSLWN SGESAGINPP AGYQQLLTCL PTDHKILEEE QNQRKRKSYE 180 LDEAVSQSSL ANSSNEFNLF QSNSLTGNFQ LISEKQSKSK KARLIETNKR PSSSNINFQQ 240 ASSSVSSIDQ EPDPEAIAQM KEMIYRAAAF RPVDFGAEVL EKPKRKNVKI STDPQTVAAR 300 QRRERISERI RVLQRLVPGG SKMDTASMLD EAANYLKFLR SQVKALEVIG QKQDPFTSIV 360 PFNYPIPMQL PHFPLQNPNQ IHRPKS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 177 | QRKRKS |
2 | 299 | 304 | RQRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400004456 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238447 | 0.0 | AC238447.1 Solanum lycopersicum chromosome 3 clone C03HBa0079K08, complete sequence. | |||
GenBank | AC238465 | 0.0 | AC238465.1 Solanum lycopersicum chromosome 3 clone C03HBa0241F16, complete sequence. | |||
GenBank | EU124730 | 0.0 | EU124730.2 Solanum lycopersicum chromosome 3 clone C03HBa0001E24, complete sequence. | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006343023.1 | 0.0 | PREDICTED: transcription factor bHLH87 | ||||
Refseq | XP_006343024.1 | 0.0 | PREDICTED: transcription factor bHLH87 | ||||
Swissprot | Q8S3D2 | 6e-80 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | M0ZRC9 | 0.0 | M0ZRC9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400006453 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4350 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 6e-72 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400004456 |
Entrez Gene | 102600649 |
Publications ? help Back to Top | |||
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