PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004393
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 169aa    MW: 19278.7 Da    PI: 10.8327
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004393genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-321571158
             CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                          dep++VNaKQyq+Il+RRq Ra+le+++kl +k+rkpylheSRh+hAl+R+Rg+gGrF
  PGSC0003DMP400004393 15 DEPIFVNAKQYQAILRRRQYRARLEAQNKL-SKGRKPYLHESRHRHALNRARGPGGRF 71
                          79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-331374IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.8381474IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.3E-271671IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-221739IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-224871IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MVSPRVPLPL DLKQDEPIFV NAKQYQAILR RRQYRARLEA QNKLSKGRKP YLHESRHRHA  60
LNRARGPGGR FVNMKKPRES KSPDLINGQD NQVSDELQLN RKMLEPNIHQ SRSYSTPVYS  120
GITSGSNGDA IYHHQSFKYS AFSARNRGTS QLDKEKKDNT SNPCLSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-221585269NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004393
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-127HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342951.11e-121PREDICTED: nuclear transcription factor Y subunit A-3-like
SwissprotQ93ZH23e-36NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLM0ZR701e-121M0ZR70_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063581e-121(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-38nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]