PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004391
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 284aa    MW: 31868.3 Da    PI: 10.1007
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004391genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.83.1e-32130186158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           dep++VNaKQyq+Il+RRq Ra+le+++kl +k+rkpylheSRh+hAl+R+Rg+gGrF
  PGSC0003DMP400004391 130 DEPIFVNAKQYQAILRRRQYRARLEAQNKL-SKGRKPYLHESRHRHALNRARGPGGRF 186
                           79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-33128189IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.838129189IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.5E-27131186IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-22132154IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-22163186IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSTFPGPQNS KELNYHFQDQ DSSSTQSTSQ SCPEAANEGE RKSHGKSSMP LRAGSVRSSG  60
KSDDSQSVSS QEHGWTFDMY QKNFAVVPFP HPDPYYHGLV AAYGNQAMVQ SQMLGMVSPR  120
VPLPLDLKQD EPIFVNAKQY QAILRRRQYR ARLEAQNKLS KGRKPYLHES RHRHALNRAR  180
GPGGRFVNMK KPRESKSPDL INGQDNQVSD ELQLNRKMLE PNIHQSRSYS TPVYSGITSG  240
SNGDAIYHHQ SFKYSAFSAR NRGTSQLDKE KKDNTSNPCL SSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-21130200269NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004391
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-127HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342951.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
TrEMBLM0ZR710.0M0ZR71_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063580.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-43nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]