PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004276
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 407aa    MW: 46695.9 Da    PI: 9.103
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004276genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.3e-1477136155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a+ k++g
  PGSC0003DMP400004276  77 SRFRGVSRHRWTGRYEAHLWDkASWNVtqkKKgKQVYLGAYDEEESAARAYDLAAIKYWG 136
                           789******************877754655447*************************98 PP
2AP2538.4e-17179230155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV +++ ++rW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  PGSC0003DMP400004276 179 SKYRGVARHHHNNRWEARIGRvF---G-NKYLYLGTYNTQEEAARAYDIAAIEYRG 230
                           89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-1677146IPR016177DNA-binding domain
PfamPF008478.4E-1277136IPR001471AP2/ERF domain
CDDcd000181.02E-1977146No hitNo description
SMARTSM003808.7E-2578150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-1578145IPR001471AP2/ERF domain
PROSITE profilePS5103219.37578144IPR001471AP2/ERF domain
PRINTSPR003671.4E-57990IPR001471AP2/ERF domain
CDDcd000181.41E-23179238No hitNo description
SuperFamilySSF541717.19E-18179240IPR016177DNA-binding domain
PfamPF008473.9E-12179230IPR001471AP2/ERF domain
PROSITE profilePS5103218.281180238IPR001471AP2/ERF domain
SMARTSM003807.5E-24180244IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17180238IPR001471AP2/ERF domain
PRINTSPR003671.4E-5220240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MNAISVKCEK LSPGNRRSLC MVDYDIPVNN KCVKRRRKSP VAAVIVNDNN NNGQKLDSSK  60
VDQSSSIVQT RTVKRSSRFR GVSRHRWTGR YEAHLWDKAS WNVTQKKKGK QVYLGAYDEE  120
ESAARAYDLA AIKYWGTTTF TNFPISDYEK EIEIMQNMTK EEHLASLRRR SSGFARGVSK  180
YRGVARHHHN NRWEARIGRV FGNKYLYLGT YNTQEEAARA YDIAAIEYRG TNAMTNFDMN  240
TYIRWLKPDA NSLMQFQDLT SEDQPIQTSN TNDMINPLHD SSYSFNHNHF TTTTNTEKLY  300
AIPRSQEPIE RKMPLSYCRK SSSPTALSLL LRSSMFQELV EKNSSTDSEE SEENNMKHGA  360
QSNRENDFLF YTNDKLPKLE SLENGTTSSS ALCDREGQQY FGIDES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004276
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166579.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLM0ZQY30.0M0ZQY3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000061700.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34402145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-91AP2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]