PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004193
Common NameLOC102605010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 375aa    MW: 42205 Da    PI: 4.5253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004193genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19129178255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  PGSC0003DMP400004193 129 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 178
                           89*******.**********82....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-29128185IPR001471AP2/ERF domain
PROSITE profilePS5103223.657129186IPR001471AP2/ERF domain
PfamPF008471.0E-12129178IPR001471AP2/ERF domain
CDDcd000183.95E-33129185No hitNo description
SMARTSM003804.0E-38129192IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21129185IPR016177DNA-binding domain
PRINTSPR003674.3E-10130141IPR001471AP2/ERF domain
PRINTSPR003674.3E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDHHNMLCPV KYTEHKRTIR KVTNIKPLKK VADVRKSSEY NPTIPRTVRI SVTDPDATDS  60
SSDEEELFGR KRVKRYISEI SIEMQSINDV KTVSTSNGKK RVAEASQAKQ KALKGKEVVQ  120
LPADGTVRKF RGVRQRPWGK WAAEIRDPAR RVRLWLGTYD TAEEAAMVYD NAAIKLRGPD  180
ALTNFITPPM KENPEVNVAS NSGYESGDES HNLSSPTSVL RFRTSQSSEE AEQQSVSGSE  240
PILEETKVEE NCTILVEQPN SEQNVEHLEC QGETLTVIPD YSNEYLPTDV SFLDDFFNFA  300
DAEQTLFNDT TSFTNDDLLT PSKYVPSWDF TNDFVLDPEI CKFDDSFLDL GALEVDNYFK  360
DIGDFSSVDV LMAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21128193467ATERF1
3gcc_A1e-21128193467ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004193
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360182.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLM0ZQQ90.0M0ZQQ9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000060410.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-67cytokinin response factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]