PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400004193 | ||||||||
Common Name | LOC102605010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 375aa MW: 42205 Da PI: 4.5253 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 129 | 178 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ kl+g PGSC0003DMP400004193 129 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 178 89*******.**********82....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 128 | 185 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.657 | 129 | 186 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 129 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.95E-33 | 129 | 185 | No hit | No description |
SMART | SM00380 | 4.0E-38 | 129 | 192 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-21 | 129 | 185 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.3E-10 | 130 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 152 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MDHHNMLCPV KYTEHKRTIR KVTNIKPLKK VADVRKSSEY NPTIPRTVRI SVTDPDATDS 60 SSDEEELFGR KRVKRYISEI SIEMQSINDV KTVSTSNGKK RVAEASQAKQ KALKGKEVVQ 120 LPADGTVRKF RGVRQRPWGK WAAEIRDPAR RVRLWLGTYD TAEEAAMVYD NAAIKLRGPD 180 ALTNFITPPM KENPEVNVAS NSGYESGDES HNLSSPTSVL RFRTSQSSEE AEQQSVSGSE 240 PILEETKVEE NCTILVEQPN SEQNVEHLEC QGETLTVIPD YSNEYLPTDV SFLDDFFNFA 300 DAEQTLFNDT TSFTNDDLLT PSKYVPSWDF TNDFVLDPEI CKFDDSFLDL GALEVDNYFK 360 DIGDFSSVDV LMAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 128 | 193 | 4 | 67 | ATERF1 |
3gcc_A | 1e-21 | 128 | 193 | 4 | 67 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400004193 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006360182.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | M0ZQQ9 | 0.0 | M0ZQQ9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400006041 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-67 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400004193 |
Entrez Gene | 102605010 |
Publications ? help Back to Top | |||
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