PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400003986 | ||||||||
Common Name | LOC102595484 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 22780.7 Da PI: 6.5412 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.1e-17 | 29 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++++g PGSC0003DMP400003986 29 PVFRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVAALSIKG 79 579****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-11 | 29 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 30 | 88 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.537 | 30 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-30 | 30 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-33 | 30 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-9 | 31 | 42 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.98E-30 | 31 | 89 | No hit | No description |
PRINTS | PR00367 | 3.9E-9 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MNSVAAQDNN EIISNNKSIK RNRDSSKHPV FRGVRMRNWG KWVSEIREPR KKSRIWLGTF 60 PNPEMAARAH DVAALSIKGN SAILNFPELA GLLPRPATLS PRDIQAAAAK AAAMDKFDNN 120 NGITSPNNSI SSNMSTSSSL SSLVSAIDLA TSEELTQIIE LPRLGTSFFG DELKNDFVFA 180 DMETGWLYPD DGGMISSCFE PSLLWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 25 | 88 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400003986 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 1e-148 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006359762.1 | 1e-151 | PREDICTED: dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 6e-63 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | M0ZQB1 | 1e-149 | M0ZQB1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400005709 | 1e-150 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 3e-56 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400003986 |
Entrez Gene | 102595484 |
Publications ? help Back to Top | |||
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