PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400003911
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 197aa    MW: 22532.5 Da    PI: 7.2692
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400003911genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-194289354
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                          y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++
  PGSC0003DMP400003911 42 YLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMR 89
                          88******.**********933...5***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.98E-2641102No hitNo description
SMARTSM003804.5E-2841109IPR001471AP2/ERF domain
PROSITE profilePS5103219.7741103IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-184290IPR016177DNA-binding domain
PRINTSPR003676.3E-94253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-2642102IPR001471AP2/ERF domain
PfamPF008473.1E-124289IPR001471AP2/ERF domain
PRINTSPR003676.3E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDLIKSSTSS STSKSTKPRK SNGTSNQSVK QKAEEQQSNF RYLGVRRRPW GRYAAEIRDP  60
NTKERHWLGT FDTAEEAALA YDRAARSMRV NNKSNKPTRT NFVYSDMPHG YSVTCIVSPD  120
DEYQHHHHQQ QQKQLLVFDQ TENAPAPNVD YEAQFSHFSL SNMNNVGGDS CDGGEFVSQQ  180
YYNPNYDVHM EDGYRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1741891463Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400003911
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2470700.0AC247070.6 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-56c7 map 11, complete sequence.
GenBankAC2470720.0AC247072.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-53f5 map 11, complete sequence.
GenBankAC2471050.0AC247105.3 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-68l9 map 11, complete sequence.
GenBankAC2471140.0AC247114.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-10d16 map 11, complete sequence.
GenBankAC2471210.0AC247121.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-18j22 map 11, complete sequence.
GenBankAC2471310.0AC247131.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-49n18 map 11, complete sequence.
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343508.11e-146PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLM0ZQ551e-147M0ZQ55_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000055961e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.15e-29ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]