PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400003904
Common NameLOC107059898
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 291aa    MW: 33105.8 Da    PI: 5.3374
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400003904genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-184289354
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                          y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++
  PGSC0003DMP400003904 42 YLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMR 89
                          88******.**********933...5***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.30E-2641102No hitNo description
SMARTSM003804.5E-2841109IPR001471AP2/ERF domain
PROSITE profilePS5103219.7741103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2542102IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-174289IPR016177DNA-binding domain
PfamPF008475.9E-124289IPR001471AP2/ERF domain
PRINTSPR003671.2E-84253IPR001471AP2/ERF domain
PRINTSPR003671.2E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDLINSSTFS STSKSTKQRK NVGASTQSIK QKAEEQQSNF RYLGVRRRPW GRYAAEIRDP  60
NTKERHWLGT FDTAEEAALA YDRAARSMRV NNKSNKPTRT NFVYSDMPHG YSVTCIVSPD  120
DEYQHHHHQQ QQKQLLVFDQ TENAPAPNVD YEAQFSHFSL SNMNNVGGDS CDGGEFVSQQ  180
YYNPNYDVHM EDGYRYDSKN RTSTELPPLP EDITSSGNYY NLSSEFPNSE MGYNSKNEMI  240
IGTNNEYHQY GASTMTTTTA GNFSYFGFDD CLQPLQDNPS NNNSLGYWFS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-174289351ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400003904
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2470700.0AC247070.6 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-56c7 map 11, complete sequence.
GenBankAC2470720.0AC247072.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-53f5 map 11, complete sequence.
GenBankAC2471050.0AC247105.3 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-68l9 map 11, complete sequence.
GenBankAC2471140.0AC247114.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-10d16 map 11, complete sequence.
GenBankAC2471210.0AC247121.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-18j22 map 11, complete sequence.
GenBankAC2471310.0AC247131.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-49n18 map 11, complete sequence.
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162468.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLM0ZQ480.0M0ZQ48_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000055850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-30ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]