PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400003829
Common NameLOC102585418
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 488aa    MW: 55143.9 Da    PI: 5.2613
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400003829genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS339.94.5e-104954801373
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselyk.......alppsetsekn......... 73 
                           l++lL+ cA++v+sgd+e a+++L+++++ +sp+gd+ qRla++f+ +L arl+r + +l+k       a      +  +         
  PGSC0003DMP400003829  95 LRTLLIICAQFVASGDQESASEMLKQIRQESSPTGDAYQRLASVFADGLVARLSRDGATLSKggsieflA-----LPM-Slpyaaltpk 177
                           5789***************************************************999988733222221.....111.1233344455 PP

                  GRAS  74 ....sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeel 158
                               ++++l+a+++    +P++k+s   aN++I   + +++++HiiDf+i +G+QWp L+q L+  p+gpp+lRiTg++ p++g  +  
  PGSC0003DMP400003829 178 rmtdTADNLKAYHVHLSSCPFIKVSISFANKMIFHTARNATTLHIIDFGILYGFQWPILIQHLSVMPGGPPKLRITGINLPQPG-FRPA 265
                           56679999************************************************************************8865.6678 PP

                  GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                           eetg+ La+++e+++vpfe+n++v +++e +e+++L++++gE +aVn+ ++ ++l de+v++e +rd+vL+l+++++P+++v    + +
  PGSC0003DMP400003829 266 EETGRLLARYCERFNVPFEYNAIVIQNWERIEIKDLKLESGEFVAVNCLFRFENLSDETVDVECPRDAVLSLIQKMNPDIFVQGVTNGS 354
                           9**************************************************************************************** PP

                  GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                           +ns+ F++rf eal +ysalfd+++a+lpr++++r   E+el +re++nv+acegaer+er et+e+W+ r  +aGFk +pl+++++k+
  PGSC0003DMP400003829 355 YNSPFFVTRFQEALLHYSALFDMFDATLPRDNQQRLHFEQELYRREAMNVIACEGAERVERPETYEQWQVRNVRAGFKILPLNQEVMKT 443
                           ***************************************************************************************** PP

                  GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                            k  ++  + + + + e+ +++v+gWkdr + + S+W
  PGSC0003DMP400003829 444 LKDNVEAGYHRDFVLYEDGNWMVQGWKDRIICASSCW 480
                           ******999899************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.32969461IPR005202Transcription factor GRAS
PfamPF035141.5E-10195480IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDPPSNKTPD SANTSKLEDQ IVLSSFDQPL NPPHCDKDER SDKQSAKYAE EVELTEIFDM  60
VLLCTCAKAK KVSCDISSEI SSEVEKSPKN AALDLRTLLI ICAQFVASGD QESASEMLKQ  120
IRQESSPTGD AYQRLASVFA DGLVARLSRD GATLSKGGSI EFLALPMSLP YAALTPKRMT  180
DTADNLKAYH VHLSSCPFIK VSISFANKMI FHTARNATTL HIIDFGILYG FQWPILIQHL  240
SVMPGGPPKL RITGINLPQP GFRPAEETGR LLARYCERFN VPFEYNAIVI QNWERIEIKD  300
LKLESGEFVA VNCLFRFENL SDETVDVECP RDAVLSLIQK MNPDIFVQGV TNGSYNSPFF  360
VTRFQEALLH YSALFDMFDA TLPRDNQQRL HFEQELYRRE AMNVIACEGA ERVERPETYE  420
QWQVRNVRAG FKILPLNQEV MKTLKDNVEA GYHRDFVLYE DGNWMVQGWK DRIICASSCW  480
IPLHRSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-4010248225379Protein SCARECROW
5b3h_D1e-4010248225379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400003829
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169567.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE581e-166SCL14_ARATH; Scarecrow-like protein 14
TrEMBLM0ZPY50.0M0ZPY5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000054800.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-166SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]