PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400003807
Common NameLOC102594599
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 346aa    MW: 38526 Da    PI: 6.2367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400003807genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12131182155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ ++ +r+l+P++   + ++ + a+i   A++++k+L+
  PGSC0003DMP400003807 131 QRMTHIAVERNRRKQMNEYLAVIRSLMPPS---YVQRGDQASIIGGAINFVKELE 182
                           79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-16129205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.01E-11129186No hitNo description
PROSITE profilePS5088814.723130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-12131200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-8136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MALETVIYNQ ETFGYCCKEY YNNNLGNVNY NYELDLSQGE GGAGEMSFTN LLDHNNREES  60
SSSPPELMYN YNAREYNIWD PNSSIEDHQL FIEGSPAAEI PAAAVRSAAT SGRRKRRRTR  120
SCKNKEELEN QRMTHIAVER NRRKQMNEYL AVIRSLMPPS YVQRGDQASI IGGAINFVKE  180
LEHHLQTLEA QKRSHSQKQE HSDNHGSSSS PLFADYFAFP QYSTHFKSTS PAAPASTAAV  240
GSCDSPLATE KMSALADIEV SMAESHANLK ILSKRRPKQL LKIVAGLQCL WLTVLHLNVT  300
TVDHMVLYSL SLKVEEGCQL TTADEIADSV NQLLGRIQEE AASSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113117RKRRR
2113118RKRRRT
3131142RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400003807
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338108.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T41e-87BH096_ARATH; Transcription factor bHLH96
TrEMBLM0ZPW70.0M0ZPW7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000054460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-86bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]