PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400003806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 324aa MW: 36303.8 Da PI: 7.1685 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.3 | 2.5e-12 | 131 | 182 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +r+l+P++ + ++ + a+i A++++k+L+ PGSC0003DMP400003806 131 QRMTHIAVERNRRKQMNEYLAVIRSLMPPS---YVQRGDQASIIGGAINFVKELE 182 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.66E-11 | 129 | 186 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-16 | 129 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.723 | 130 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 131 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-12 | 131 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-8 | 136 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MALETVIYNQ ETFGYCCKEY YNNNLGNVNY NYELDLSQGE GGAGEMSFTN LLDHNNREES 60 SSSPPELMYN YNAREYNIWD PNSSIEDHQL FIEGSPAAEI PAAAVRSAAT SGRRKRRRTR 120 SCKNKEELEN QRMTHIAVER NRRKQMNEYL AVIRSLMPPS YVQRGDQASI IGGAINFVKE 180 LEHHLQTLEA QKRSHSQKQE HSDNHGSSSS PLFADYFAFP QYSTHFKSTS PAAPASTAAV 240 GSCDSPLATE KMSALADIEV SMAESHANLK ILSKRRPKQL LKIVAGLQCL WLTVLHLNVT 300 TVDHMVLYSL SLKVCTLFPH LVN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 117 | RKRRR |
2 | 113 | 118 | RKRRRT |
3 | 131 | 142 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400003806 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338108.1 | 0.0 | PREDICTED: transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 5e-75 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | M0ZPW6 | 0.0 | M0ZPW6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400005446 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 4e-73 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400003806 |
Publications ? help Back to Top | |||
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