PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400003710

Common Name

LOC102586817

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 734aa MW: 80352.1 Da PI: 5.6417

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400003710	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	60	115	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++++++++p+ ++r+eL ++lgL+ qVk+WFqN+R+++k PGSC0003DMP400003710 60 KKRYHRHTQHQIQEMESFYKECNHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 115 688999***********************************************998 PP
2	START	220.5	5.6e-69	250	471	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 ela +a++el+++a+ eep+W+ ss e++ ++e+ ++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW++ +a PGSC0003DMP400003710 250 ELAVTAMEELIRMAQTEEPLWMPSSgiissEILCEQEYARIFPRGIGpkpatLNSEASRESAVVIMNHINLVEILMDVN-QWTTVFAgl 337 57899**********************9**********999****************************.***** PP ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS START 78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157 ka+tlev+s+g galq+m+ae+q++splvp R+ +fvRy++q+g+g+wv+vdvS+d+ ++ + v R++++pSg+li+++ PGSC0003DMP400003710 338 vsKAMTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGEGTWVVVDVSLDNLRPTS----VPRCRRRPSGCLIREM 422 **************************************************************975....8*********** PP CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +ng+s+v+wvehv+++++ +h ++++lv+sg+a+gak+wvatl+rqce+ PGSC0003DMP400003710 423 PNGYSRVIWVEHVEVDEKAVHDIYKPLVNSGIAFGAKRWVATLDRQCER 471 *********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-21	44	119	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.55E-18	45	117	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.71	57	117	IPR001356	Homeobox domain
SMART	SM00389	3.0E-16	58	121	IPR001356	Homeobox domain
CDD	cd00086	1.96E-16	60	118	No hit	No description
Pfam	PF00046	2.0E-16	60	115	IPR001356	Homeobox domain
PROSITE profile	PS50848	45.897	241	474	IPR002913	START domain
SuperFamily	SSF55961	1.99E-35	242	473	No hit	No description
CDD	cd08875	2.48E-126	245	470	No hit	No description
SMART	SM00234	4.8E-66	250	471	IPR002913	START domain
Pfam	PF01852	6.0E-58	251	471	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	3.1E-6	320	471	IPR023393	START-like domain
SuperFamily	SSF55961	2.27E-24	491	722	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MFNSHQHLLD ISSSAQRTPD NELDFIRDEE FDSNSGADNM EAPNSGDDDQ AEPNQPPNKK 60 KRYHRHTQHQ IQEMESFYKE CNHPDDKQRK ELGRRLGLEP LQVKFWFQNK RTQMKAQHER 120 CENTQLRNEN EKLRSENIRY KEALSNAACP NCGGPAAIGE MSFDEHQLRI ENARLRDEID 180 RITGIAGKYV GKSGLGFSHQ LPLPPPEAPR ALDLAFGPQS GLLGEMYAAG DLLRNAVTGL 240 TDAEKPVVIE LAVTAMEELI RMAQTEEPLW MPSSGIISSE ILCEQEYARI FPRGIGPKPA 300 TLNSEASRES AVVIMNHINL VEILMDVNQW TTVFAGLVSK AMTLEVLSTG VAGNYNGALQ 360 VMTAEFQVPS PLVPTRENYF VRYCKQHGEG TWVVVDVSLD NLRPTSVPRC RRRPSGCLIR 420 EMPNGYSRVI WVEHVEVDEK AVHDIYKPLV NSGIAFGAKR WVATLDRQCE RLASVLAINI 480 PTGDVGIITC PAGRKSMLKL AERMVMSFCA GVGASTTHIW TTLSGSGADD VRVMTRKSID 540 DPGRPPGIVL SAATSFWLPV SPKRVFDFLR DENSRNEWDI LSNGGIVQEM AHIANGRDPG 600 NCVSLLRVNT GTNSNQSNML ILQESTTDIT GSYVIYAPVD IAAMNVVLGG GDPDYVALLP 660 SGFAILPDGP MNHHGGGNSD IDSPGGSLLT VAFQILVDSV PTAKLSLGSV ATVNSLIKCT 720 VEKIKGAVTS ANA*

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MFNSHQHLLD ISSSAQRTPD NELDFIRDEE FDSNSGADNM EAPNSGDDDQ AEPNQPPNKK  60
KRYHRHTQHQ IQEMESFYKE CNHPDDKQRK ELGRRLGLEP LQVKFWFQNK RTQMKAQHER  120
CENTQLRNEN EKLRSENIRY KEALSNAACP NCGGPAAIGE MSFDEHQLRI ENARLRDEID  180
RITGIAGKYV GKSGLGFSHQ LPLPPPEAPR ALDLAFGPQS GLLGEMYAAG DLLRNAVTGL  240
TDAEKPVVIE LAVTAMEELI RMAQTEEPLW MPSSGIISSE ILCEQEYARI FPRGIGPKPA  300
TLNSEASRES AVVIMNHINL VEILMDVNQW TTVFAGLVSK AMTLEVLSTG VAGNYNGALQ  360
VMTAEFQVPS PLVPTRENYF VRYCKQHGEG TWVVVDVSLD NLRPTSVPRC RRRPSGCLIR  420
EMPNGYSRVI WVEHVEVDEK AVHDIYKPLV NSGIAFGAKR WVATLDRQCE RLASVLAINI  480
PTGDVGIITC PAGRKSMLKL AERMVMSFCA GVGASTTHIW TTLSGSGADD VRVMTRKSID  540
DPGRPPGIVL SAATSFWLPV SPKRVFDFLR DENSRNEWDI LSNGGIVQEM AHIANGRDPG  600
NCVSLLRVNT GTNSNQSNML ILQESTTDIT GSYVIYAPVD IAAMNVVLGG GDPDYVALLP  660
SGFAILPDGP MNHHGGGNSD IDSPGGSLLT VAFQILVDSV PTAKLSLGSV ATVNSLIKCT  720
VEKIKGAVTS ANA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400003710

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF518780	0.0	JF518780.1 UNVERIFIED: Solanum lycopersicum GL2 protein-like mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006348085.1	0.0	PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2
Refseq	XP_015164555.1	0.0	PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	M0ZPP8	0.0	M0ZPP8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400005277	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA932	24	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400003710
Entrez Gene	102586817

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]