PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400003606
Common NameLOC102602587
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 301aa    MW: 33555.4 Da    PI: 7.2332
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400003606genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.2e-161462148
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                          +g+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl
  PGSC0003DMP400003606 14 KGPWSPEEDAKLKEYIDKFGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                          79*********************************************97 PP
2Myb_DNA-binding39.41.4e-1269111246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g ++ eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  PGSC0003DMP400003606  69 GEFSDEEDRIICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                           789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9962IPR017930Myb domain
SuperFamilySSF466893.88E-2711109IPR009057Homeodomain-like
SMARTSM007171.3E-111364IPR001005SANT/Myb domain
PfamPF002495.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-241569IPR009057Homeodomain-like
CDDcd001677.67E-91662No hitNo description
PROSITE profilePS5129422.28363117IPR017930Myb domain
SMARTSM007178.8E-1267115IPR001005SANT/Myb domain
PfamPF002492.6E-1169111IPR001005SANT/Myb domain
CDDcd001671.70E-870113No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYID KFGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGF  120
DSSSHKIIRP LNHHHYQHQI PTNCYNNYSS QISLLQASSL LISSNYPNNT TFPSYETNIP  180
STIPSSTSFL SAGASTSCTS GITASTFTGP TTSSAESCDI SNFNFHSYMY NNNGVISEGE  240
KLISGNNGSG CHVDEQENPL DYSSLEEIKD LISTNHVTCN SNSFLLDHEI KTEEKVMMYY  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400003606
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345703.10.0PREDICTED: transcription factor RAX2-like
TrEMBLM0ZPG20.0M0ZPG2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000050850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-80myb domain protein 36
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]