PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400003204
Common NameLOC102596673
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 472aa    MW: 53156 Da    PI: 5.0218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400003204genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14268315254
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++h + Er+RR ++N+++  Lr+++P++      K++ a+i++ A++YI++L
  PGSC0003DMP400003204 268 ETKHFATERQRRVHLNDKYKALRSMVPNP-----SKNDRASIVKDAIDYINEL 315
                           689*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.28E-15262330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-12267317No hitNo description
PfamPF000108.3E-12268315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-13269327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MYVEESVCYD PATHHVQHEG LTEDVFAIQE HTYHNNNNSS QQDVAAAAAA AAALEMEFQQ  60
QMNLEMEQCY NNNNMQDQSN NNIINQGLSC DQSNWGEMNF PPYQNQEHND NSNNNNNFHQ  120
QDFSNPISEP PYLTTPDLLN MFPLPRCSQS SLLPQKSPNL LTSLGLIGDI DGGGASTSTA  180
IYDPSSLVLP LNLPPQPPLL RELFHSFPHG YGLRNLRSNN NTSFFNGLEE QDQGLYQENG  240
ETRPFDNGIF EFSAGMNDIA KNRDGIKETK HFATERQRRV HLNDKYKALR SMVPNPSKND  300
RASIVKDAID YINELKRGVN ELKLMVEKKR CNKDRIKRQK TEGGTVSMDG TDAKQIMDEV  360
EQSYNGNSLR SSWLQRRSKN TEVDVRIVDD EVTVKLVQQK RINCLFFASK VLDDLQLDLH  420
HVAGGLIGDY YSFLFNSKIS EGSTVYASAI AKKLIEVVDI QYAAIAPTNS Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400003204
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354586.10.0PREDICTED: transcription factor bHLH91-like
TrEMBLM0ZNJ40.0M0ZNJ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000044970.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-75bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]