PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400003135
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 317aa    MW: 34748.7 Da    PI: 4.8265
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400003135genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-1195139347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+  ++++   +G+g+W++I+r+   +Rt+ q+ s+ qky
  PGSC0003DMP400003135  95 PWTEEEQRSFLRGLDIYGKGDWRSISRHCVITRTAIQVASHAQKY 139
                           8***************************9989************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0077859IPR001005SANT/Myb domain
SuperFamilySSF466893.04E-71061IPR009057Homeodomain-like
CDDcd001671.68E-41257No hitNo description
PROSITE profilePS500904.7971257IPR017877Myb-like domain
PROSITE profilePS5129416.98588144IPR017930Myb domain
SuperFamilySSF466899.66E-1591144IPR009057Homeodomain-like
SMARTSM007173.4E-1092142IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.4E-1493142IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.6E-1094141IPR009057Homeodomain-like
CDDcd001671.75E-995140No hitNo description
PfamPF002494.3E-1095139IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSTDRTCNSS FWTREEDKIF ENILAIYFND NNLLTKMEEA LPEKTVDEIK DHYNILLEDI  60
DAIDFGGAPL PNYPELQSNA NQNKKVDVKW RRGTPWTEEE QRSFLRGLDI YGKGDWRSIS  120
RHCVITRTAI QVASHAQKYF KRVEANKKGN RRARAKPSVL DVTGVDAEFG GNSQVPMDMI  180
GPACEGSQAV PNTSTESMCH RERTNAEQMT AVVGGKLSGE NAFVNVDASS GTSGHSIPRI  240
GSELEALLSH PMDEDKDIDL IFDVGMAPTS DAGIAPTAQT GMSGYAAAGE APAQLPPFSP  300
SSYFGDGVWR SLDPRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400003135
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361820.10.0PREDICTED: transcription factor DIVARICATA-like
TrEMBLM0ZND40.0M0ZND4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000043960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-39MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]