PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400003134
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 315aa    MW: 34492.2 Da    PI: 4.6391
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400003134genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-0795135347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rW +eE+  ++++   +G+g+W++I+r    +Rt+ q+  + qky
  PGSC0003DMP400003134  95 RWIEEEHRSFLRGLDIYGKGDWRSISR----TRTAMQVATHAQKY 135
                           8************************98....56788888888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.3E-5859IPR001005SANT/Myb domain
SuperFamilySSF466891.04E-71061IPR009057Homeodomain-like
PROSITE profilePS500904.9721257IPR017877Myb-like domain
CDDcd001676.70E-61257No hitNo description
Gene3DG3DSA:1.10.10.609.7E-41257IPR009057Homeodomain-like
PROSITE profilePS5129410.57388140IPR017930Myb domain
SuperFamilySSF466899.66E-1291140IPR009057Homeodomain-like
SMARTSM007172.2E-492138IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.5E-993138IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.2E-694137IPR009057Homeodomain-like
CDDcd001677.25E-795136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSTDRTCNST FWTREEDKIF EHILAIYFND NNLLTKMEEA LPGKTVDEIK DHYNMLLEDI  60
DDIDSGGAPL PNNPEMQSNA NQNTKADVEW RRGTRWIEEE HRSFLRGLDI YGKGDWRSIS  120
RTRTAMQVAT HAQKYFKRIE ANKKRNRRAR AKPSVLDITG VDAEFGGTSQ VPITVDMIGP  180
ACEGSQAVPD TSTESMCHRE STNAEQMTAV VGGELSGENA FVNVDASSGT SGHSIPRIGS  240
ELEALLSHPM DKDNDIDLIF DVGMAPTSDA GIAPTAQTGM SGYAAAGEAP AQLPPFAPSS  300
YFGDGVWRSL DTRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400003134
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361820.10.0PREDICTED: transcription factor DIVARICATA-like
TrEMBLM0ZND30.0M0ZND3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000043940.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-37MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]