PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400003133
Common NameLOC102591627
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 311aa    MW: 34492.2 Da    PI: 4.3469
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400003133genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.2e-1195139347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT++E+  ++++ + +G g+W++I+r+   +Rt+ q+ s+ qk+
  PGSC0003DMP400003133  95 PWTEQEHRSFLRGLAIYGRGDWRSISRHCVITRTGMQVASHAQKF 139
                           8***************************9989***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172859IPR001005SANT/Myb domain
SuperFamilySSF466891.86E-61061IPR009057Homeodomain-like
PROSITE profilePS500904.4141257IPR017877Myb-like domain
PROSITE profilePS5129416.64888144IPR017930Myb domain
SuperFamilySSF466893.38E-1490144IPR009057Homeodomain-like
SMARTSM007171.6E-992142IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.7E-1393142IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.3E-994135IPR009057Homeodomain-like
PfamPF002494.1E-995138IPR001005SANT/Myb domain
CDDcd001674.37E-995139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSTDRTCNSS FWTREEDKIF ENTLAIYFNK NNLLRMMEEA LPQKSLQDIK DHYNILLEDI  60
NAIDSGCVPL HNYPEMQSNA NQNLKADVER RRGTPWTEQE HRSFLRGLAI YGRGDWRSIS  120
RHCVITRTGM QVASHAQKFY KRLEAANKGN RRASILDITS VDAEAAGTSQ VPNTEDMIGP  180
ACGGSQVVPN TSNESMLPQE STNAEQQMIT VAEGIDDLMM EQEDVTAARS GTYSHPITRI  240
GSDLEALLAE PMDVDNDISS IFDVGKAPTS SYAAVEAAPP YLHPFAPSSN TPVDDEGIFD  300
TDDLFTDQMF *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400003133
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-137HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361808.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_015170955.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN65e-44SRM1_ARATH; Transcription factor SRM1
TrEMBLM0ZND20.0M0ZND2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000043920.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-46MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]