PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400003048
Common NameLOC102594353
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 330aa    MW: 37097.4 Da    PI: 9.447
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400003048genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.58.5e-1937129186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf...erspkqCkekwenlnkrykkikegek....krtsessstcpyf 82 
                           +W+++e+ aLi+a+r+++ +lr+g+l++++W+ev++++ +r +    ++++qC++k+e+l+kry+++ +++      r+ +  s +++f
  PGSC0003DMP400003048  37 CWSHEETVALIDAYRDKWYSLRKGNLRANHWQEVADAVGSRCLvdpPKTAVQCRHKMEKLRKRYRAEIQRAApyggARSHRYCSAWVHF 125
                           8*************************************8888766689*****************999887511113344555677788 PP

              trihelix  83 dqle 86 
                           ++++
  PGSC0003DMP400003048 126 KRMD 129
                           8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2036131No hitNo description
PROSITE profilePS500906.3533897IPR017877Myb-like domain
SMARTSM005951.1E-945136IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MVTLSPSTQD FSTTPSQILS TSNVTVAVAS RRLPPPCWSH EETVALIDAY RDKWYSLRKG  60
NLRANHWQEV ADAVGSRCLV DPPKTAVQCR HKMEKLRKRY RAEIQRAAPY GGARSHRYCS  120
AWVHFKRMDM MERGPNAVSP PPSEDEADED VEDYHQNGVK LVGDLYGNNV HTGNRSSFQG  180
VVSNGGGGFR IRIPGMPGLA PQMAKPYSRF EEARVETPSN FGSSQMFRDG FVKKADLGKR  240
VVGEGVGEKK KEDPMTEMVD AIKVLGDGFV RMERMKMDAA RELEGMRMEM EMKRTEMILE  300
SQQRIVEAFA QALSEKKYKK AKRMPTPEC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400003048
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354664.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLM0ZN580.0M0ZN58_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000042690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80282327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-59Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]