PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002987
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family BBR-BPC
Protein Properties Length: 314aa    MW: 35426 Da    PI: 9.6828
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002987genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind306.77.9e-9413131301
             GAGA_bind   1 mdddgsre..rnkgyye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaern 71 
                           mdd g+re  r++  y                 +++++   +++++  + aerda+++er+ a++ekk+a+aerd a +qrd+a+aer+
  PGSC0003DMP400002987   1 MDDGGQREnrRHRMDYSkggyapwnvvppyqmkDQEAFI--MNTKIRMVFAERDAAVEERDRAVIEKKEAYAERDFAIQQRDTAFAERD 87 
                           899999888777775556999999999655443223444..7888988999************************************** PP

             GAGA_bind  72 kalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpk 160
                            a+ erdn+++al + e +++ +l       +gtk  ++ +++++ +++  ++  r+    +a+pi+   +ea ++ ++k r++ +k  
  PGSC0003DMP400002987  88 TAVKERDNAIAALHFLESTTNGSL---GCRTRGTKRPEQPKNHRNYNTDSVCI-NRDVPVADAFPISAISSEAAKALQVK-RSKVNKGM 171
                           ***************998754433...33467888888766644455444444.58888999999999888888887777.44444444 PP

             GAGA_bind 161 ekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
                           ++k+ k   k++k +++ +++ + + skae++ +dl  ++++++Dest+P+PvC+CtG++rqCYkWG+GGWqS+CCtt +S yPLP+ +
  PGSC0003DMP400002987 172 STKSAKSSTKTKKVNEDLNRHLTTDGSKAEWDAQDLgLIDQIQFDESTMPIPVCTCTGIPRQCYKWGSGGWQSSCCTTYLSEYPLPQLP 260
                           455555555566666777777766789*********668************************************************** PP

             GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                           ++r+aR++grKmS+++f++lL + a    dls p+DLk++WAkHGtn+++ti+
  PGSC0003DMP400002987 261 NKRHARLGGRKMSGSVFSRLLTRFAVADRDLSMPIDLKTYWAKHGTNRYITIK 313
                           ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062179.1E-921313IPR010409GAGA-binding transcriptional activator
SMARTSM012267.3E-1131313IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDDGGQRENR RHRMDYSKGG YAPWNVVPPY QMKDQEAFIM NTKIRMVFAE RDAAVEERDR  60
AVIEKKEAYA ERDFAIQQRD TAFAERDTAV KERDNAIAAL HFLESTTNGS LGCRTRGTKR  120
PEQPKNHRNY NTDSVCINRD VPVADAFPIS AISSEAAKAL QVKRSKVNKG MSTKSAKSST  180
KTKKVNEDLN RHLTTDGSKA EWDAQDLGLI DQIQFDESTM PIPVCTCTGI PRQCYKWGSG  240
GWQSSCCTTY LSEYPLPQLP NKRHARLGGR KMSGSVFSRL LTRFAVADRD LSMPIDLKTY  300
WAKHGTNRYI TIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002987
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823150.0FJ982315.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001274818.10.0protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-107BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLM0ZN100.0M0ZN10_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000041790.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92872128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-106basic pentacysteine 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]