PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400002707 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 29824.5 Da PI: 9.9367 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.1e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed ll+++vk++G g+W+++ar g++R +k+c++rw +yl PGSC0003DMP400002707 15 KGPWTSDEDRLLIEYVKLHGEGRWNSVARLTGLRRNGKSCRLRWVNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ PGSC0003DMP400002707 68 RGQITPHEERIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.789 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.89E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.54E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.65 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-14 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.86E-10 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGSSWGFIEE VGWRKGPWTS DEDRLLIEYV KLHGEGRWNS VARLTGLRRN GKSCRLRWVN 60 YLRPDLKRGQ ITPHEERIIL ELHARWGNRW STIARSLPGR TDNEIKNYWR THFKKKSKNS 120 SDNAEKSRAR LWKRQQFQQQ QQQQINNQIN NQIDIKKVMS LPTMPPAKQE MTILYPNNTI 180 DQQDQVGFFY SSMLNNSTSI SQSEPSSSNE DIMWDDLWNL DDFYGHFMIN TTTYNKTNTT 240 PCLQPMATTP AFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 15 | 116 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400002707 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340876.1 | 0.0 | PREDICTED: myb-related protein 305-like | ||||
TrEMBL | M0ZMC0 | 0.0 | M0ZMC0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003796 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 4e-75 | myb domain protein 79 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400002707 |
Publications ? help Back to Top | |||
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