PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002559
Common NameLOC102588283
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 93aa    MW: 10362.7 Da    PI: 10.1071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002559genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.63.9e-0723591854
                          HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          +  ++L++llP+ + + +s K s + +L+++++YI++L
  PGSC0003DMP400002559 23 ELVSKLQQLLPEiR-NRRSSKASASKVLQETCNYIRNL 59
                          56689*******77.899999***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.518559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-82074IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-82078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-42359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRQSS TGSSRISDDQ IIELVSKLQQ LLPEIRNRRS SKASASKVLQ ETCNYIRNLN  60
RQVDDLSDRL SQLLSTIDAD SPEAAIIRSL LM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002559
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1612821e-147EU161282.1 Solanum pennellii transcription factor style2.1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234290.16e-57transcription factor style2.1
RefseqXP_006338463.16e-57PREDICTED: transcription factor PRE1-like
RefseqXP_015064311.16e-57transcription factor PRE1
RefseqXP_016561417.16e-57PREDICTED: transcription factor PRE1-like
SwissprotQ9LJX19e-41PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U8FQB11e-55A0A1U8FQB1_CAPAN; Transcription factor PRE5
TrEMBLA0A2G2XHV21e-55A0A2G2XHV2_CAPBA; Transcription factor PRE5
TrEMBLA0A2G3ACA11e-55A0A2G3ACA1_CAPAN; transcription factor PRE1-like
TrEMBLA0A2G3D9P41e-55A0A2G3D9P4_CAPCH; Transcription factor PRE5
TrEMBLB6CG441e-55B6CG44_SOLLC; Transcription factor style2.1
TrEMBLB6CG451e-55B6CG45_SOLPN; Transcription factor style2.1
TrEMBLM0ZLZ01e-55M0ZLZ0_SOLTU; Uncharacterized protein
STRINGSolyc02g087860.2.12e-56(Solanum lycopersicum)
STRINGPGSC0003DMT4000035872e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.14e-21bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]