PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400002557 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 240aa MW: 27264.2 Da PI: 6.6317 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.1 | 7.5e-19 | 24 | 77 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA+ lgL+ rq+ +WFqNrRa++k PGSC0003DMP400002557 24 KKRRLNMEQVKALERSFEVANKLDPERKIQLARALGLQPRQIAIWFQNRRARWK 77 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.2 | 4.1e-42 | 23 | 114 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrl+ eqvk+LE+sFe +kL+perK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr++d+lk++n++L+++++eL++ PGSC0003DMP400002557 23 EKKRRLNMEQVKALERSFEVANKLDPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEMLKRHFDSLKTDNDALKAQNKELHS 111 69*************************************************************************************** PP HD-ZIP_I/II 90 elk 92 el+ PGSC0003DMP400002557 112 ELQ 114 997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-19 | 19 | 81 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.2E-19 | 22 | 83 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.665 | 23 | 79 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.8E-16 | 24 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.37E-17 | 24 | 80 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-20 | 26 | 87 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 50 | 59 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 59 | 75 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.1E-15 | 79 | 120 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSFSGVEDNE MSDDDGSSQL LGEKKRRLNM EQVKALERSF EVANKLDPER KIQLARALGL 60 QPRQIAIWFQ NRRARWKTKQ LEKDYEMLKR HFDSLKTDND ALKAQNKELH SELQLLSVKK 120 RESSGGGAIM FNLNKENEGC WSNNGSDDNN NNSIDVNLGT RTSSGDSPFY SKNVFPSGPG 180 PVPLAKFLQS SSTPPDHLNH CNKNNNIDPT VQHEGFCNMF TPVDDHTNFW PWPEQQHFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 79 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400002557 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT012922 | 0.0 | BT012922.1 Lycopersicon esculentum clone 114085R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338465.1 | 1e-178 | PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1 | ||||
Swissprot | Q00466 | 2e-61 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | M0ZLY8 | 1e-178 | M0ZLY8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003586 | 1e-179 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 2e-57 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400002557 |
Publications ? help Back to Top | |||
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