PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400002556 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 186aa MW: 21352.2 Da PI: 10.0655 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.7e-19 | 85 | 138 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA+ lgL+ rq+ +WFqNrRa++k PGSC0003DMP400002556 85 KKRRLNMEQVKALERSFEVANKLDPERKIQLARALGLQPRQIAIWFQNRRARWK 138 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.4 | 1.6e-42 | 84 | 175 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrl+ eqvk+LE+sFe +kL+perK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr++d+lk++n++L+++++eL++ PGSC0003DMP400002556 84 EKKRRLNMEQVKALERSFEVANKLDPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEMLKRHFDSLKTDNDALKAQNKELHS 172 69**************************************************************************************9 PP HD-ZIP_I/II 90 elk 92 e++ PGSC0003DMP400002556 173 EVR 175 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.55E-20 | 64 | 142 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.2E-19 | 83 | 144 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.665 | 84 | 140 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.11E-17 | 85 | 141 | No hit | No description |
Pfam | PF00046 | 2.3E-16 | 85 | 138 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-20 | 87 | 148 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.5E-6 | 111 | 120 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.5E-6 | 120 | 136 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.7E-15 | 140 | 174 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MISGTRGIMA FLPSSTPDIS LNFQDNNHHL PSTSPKLFPS PSLPHQDHFN HGVASMLMRR 60 SMSFSGVEDN EMSDDDGSSQ LLGEKKRRLN MEQVKALERS FEVANKLDPE RKIQLARALG 120 LQPRQIAIWF QNRRARWKTK QLEKDYEMLK RHFDSLKTDN DALKAQNKEL HSEVRITLIN 180 FNSSY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 140 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400002556 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 1e-146 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338465.1 | 1e-124 | PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1 | ||||
Swissprot | Q00466 | 5e-58 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | M0ZLY7 | 1e-134 | M0ZLY7_SOLTU; Uncharacterized protein | ||||
STRING | Solyc02g087840.2.1 | 1e-113 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 2e-60 | homeobox 3 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400002556 |
Publications ? help Back to Top | |||
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