PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400002458 | ||||||||
Common Name | LOC102580219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 284aa MW: 31700.2 Da PI: 7.0503 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 99.8 | 4.7e-31 | 35 | 166 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................... 65 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak++i+el+ + PGSC0003DMP400002458 35 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKHEIDELPPLqippgslnpnlypmlgiggnshqit 123 689*************************************************************6666655555555555543322211 PP TCP 66 ......ssssaseceaesssssasnsssg..............................k 89 + n+s++ + PGSC0003DMP400002458 124 snkeglN-----------------NKSINwddnvvpleppnnnnnnalgynsnflkwdpS 166 1111110.................112223333333333333233344444444444441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.554 | 37 | 95 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.0E-28 | 37 | 148 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MITREEKANE SKASSSTTSW TRLKDPRIVR VSRAFGGKDR HSKVCTVRGL RDRRVRLSVP 60 TAIQLYDLQD RLGLNQPSKV VDWLLDAAKH EIDELPPLQI PPGSLNPNLY PMLGIGGNSH 120 QITSNKEGLN NKSINWDDNV VPLEPPNNNN NNALGYNSNF LKWDPSNLSL AHSENSLSHQ 180 HQDIHHNFNL MSSMPLGSHH QVVVYPPGLP QFFHQHNIVG PSSSSEFDPK EINFQMLSNN 240 SGSENPMSSS TNSFRHSIDS TSQSIRPFHF LPSQNCDETE PSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 42 | 96 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 42 | 96 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400002458 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-154 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338357.1 | 0.0 | PREDICTED: transcription factor TCP17 | ||||
TrEMBL | M0ZLP7 | 0.0 | M0ZLP7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003453 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 2e-47 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400002458 |
Entrez Gene | 102580219 |
Publications ? help Back to Top | |||
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