PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002418
Common NameLOC102601423
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 427aa    MW: 47359.1 Da    PI: 4.2318
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002418genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-194796255
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  PGSC0003DMP400002418 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 96
                          789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.41E-3246103No hitNo description
PROSITE profilePS5103219.55947104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2747103IPR001471AP2/ERF domain
PfamPF008471.1E-134796IPR001471AP2/ERF domain
SMARTSM003801.6E-3547110IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-1947104IPR016177DNA-binding domain
PRINTSPR003676.4E-84859IPR001471AP2/ERF domain
PRINTSPR003676.4E-87086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MARKRRASEA LGENIRDNDQ GNVAWDEMVK ETAVAAALGG ARRARKRFVG VRQRPSGRWV  60
AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGANTR TNFWPCSSSS SSTPALPSKI  120
TNLLINRLKA RNNSLAAAAA AAASSSSSSD SSEPVEIHDQ DKQGEEFKEE EAYFSDLQYM  180
EYLKDPEDLI TENNMISNMS AINVSNFTNT LETCLAVNDY SVIQPVKSDE NSIAGEINNI  240
VKVDSEEEIE EENNTDIGDV EVEPIDFQFV DEIGSSCYYS PFEEINSSEI MEEGMIYGDE  300
SSMLSEAMRR MNYERKFSAS LYAFNGITEC LKLKLKSGGG VMQRERSEQL SRLINACKRN  360
RNNEEEEEKK IKDSEYSSES SSETGPSSSS PETGSSSSTI SEETTYDSEL SLWNSIDLPP  420
ICAFFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-13471031471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002418
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338418.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
TrEMBLM0ZLL20.0M0ZLL2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000034030.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-21related to AP2 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]