PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002386
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 488aa    MW: 54047 Da    PI: 5.7425
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002386genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.41.5e-38113172261
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                           ++k+l+cprC+s++tkfCy+nny+ sqPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s
  PGSC0003DMP400002386 113 PDKTLPCPRCNSMETKFCYFNNYNASQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKNS 172
                           7899****************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-28110170IPR003851Zinc finger, Dof-type
PfamPF027012.1E-31115171IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.379117171IPR003851Zinc finger, Dof-type
PROSITE patternPS013610119155IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MSEAIAIKDP AIKLFGWTIQ LPDFPAPAPE DTGDNSFSAG EVEQELKRQC DDCIDGNEHL  60
TTEDLQDQNP IQQRCDIIKE SPDYYESSTA KTSKSEEEHS ETSNSQERNL KKPDKTLPCP  120
RCNSMETKFC YFNNYNASQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKHK NSVLHYSHIS  180
VSEALSNART NFSNETHQPP LKFNGTILTF DTENPLSESM VSVLNVADKT MQNCSGNGFQ  240
KYKELRIQAG DNGDDHSDGS SVTAVSSKDN DNGLPDTPRK NYNSFPTHLP CFTEAPWPYI  300
WSSVHCRNAV PPPGYSLPGI PMPFFPATTY WGCTIPGSWN VPWMFPPTAS HNQMPLTPAP  360
DSPTSGKHSR DENVLKSEGT EEEQRKESDP GRRLWFPKTL RIDDPGEAAK SPIWAILGIK  420
HEVVDSVGGG LLNAFLPKND ERSCVSENST LLQVNPAAMS RSYSADYASQ LSATGISVRP  480
VIHTVVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002386
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338444.10.0PREDICTED: cyclic dof factor 2-like
TrEMBLM0ZLI30.0M0ZLI3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000033590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53224122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.24e-78cycling DOF factor 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]