PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400002386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 488aa MW: 54047 Da PI: 5.7425 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.4 | 1.5e-38 | 113 | 172 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny+ sqPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s PGSC0003DMP400002386 113 PDKTLPCPRCNSMETKFCYFNNYNASQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKNS 172 7899****************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-28 | 110 | 170 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-31 | 115 | 171 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.379 | 117 | 171 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 119 | 155 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MSEAIAIKDP AIKLFGWTIQ LPDFPAPAPE DTGDNSFSAG EVEQELKRQC DDCIDGNEHL 60 TTEDLQDQNP IQQRCDIIKE SPDYYESSTA KTSKSEEEHS ETSNSQERNL KKPDKTLPCP 120 RCNSMETKFC YFNNYNASQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKHK NSVLHYSHIS 180 VSEALSNART NFSNETHQPP LKFNGTILTF DTENPLSESM VSVLNVADKT MQNCSGNGFQ 240 KYKELRIQAG DNGDDHSDGS SVTAVSSKDN DNGLPDTPRK NYNSFPTHLP CFTEAPWPYI 300 WSSVHCRNAV PPPGYSLPGI PMPFFPATTY WGCTIPGSWN VPWMFPPTAS HNQMPLTPAP 360 DSPTSGKHSR DENVLKSEGT EEEQRKESDP GRRLWFPKTL RIDDPGEAAK SPIWAILGIK 420 HEVVDSVGGG LLNAFLPKND ERSCVSENST LLQVNPAAMS RSYSADYASQ LSATGISVRP 480 VIHTVVQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400002386 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338444.1 | 0.0 | PREDICTED: cyclic dof factor 2-like | ||||
TrEMBL | M0ZLI3 | 0.0 | M0ZLI3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003359 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA532 | 24 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 4e-78 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400002386 |
Publications ? help Back to Top | |||
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