PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002378
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 319aa    MW: 36181.4 Da    PI: 6.9961
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002378genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-131482148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....................TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....................kgRtlkqcksrwqkyl 48
                          +g+WT+eEd  lv  v+++G+g+W+t++ + g                     ++R+ k+c++rw +yl
  PGSC0003DMP400002378 14 KGPWTPEEDIMLVSFVQEHGPGNWRTVPTHTGsflflldlysqsefrarlivwLRRCSKSCRLRWTNYL 82
                          79*****************************************************************97 PP
2Myb_DNA-binding48.61.8e-1588133148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  PGSC0003DMP400002378  88 RGSFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 133
                           89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3982IPR017930Myb domain
SuperFamilySSF466891.09E-2611129IPR009057Homeodomain-like
SMARTSM007174.1E-111384IPR001005SANT/Myb domain
PfamPF002492.0E-131482IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-221589IPR009057Homeodomain-like
CDDcd001672.03E-81682No hitNo description
PROSITE profilePS5129424.58483137IPR017930Myb domain
SMARTSM007178.3E-1687135IPR001005SANT/Myb domain
PfamPF002491.0E-1488133IPR001005SANT/Myb domain
CDDcd001672.22E-1090132No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2590138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRPPCCDKT GVKKGPWTPE EDIMLVSFVQ EHGPGNWRTV PTHTGSFLFL LDLYSQSEFR  60
ARLIVWLRRC SKSCRLRWTN YLRPGIKRGS FTDQEEKMII QLQALLGNKW AAIASYLPER  120
TDNDIKNYWN THLKKKLKKL ETSGLYSNDG HCLSTYNSTS RGQWERTLQA DINTAKQALQ  180
NALSLDKSSP IPDYTITDIG CYPYIKQEAK MSTTTYASNA ENIAKLLKQW TKSESTNNSE  240
QSKASSSTQY SCNTNNNNAM TEYSSSFEPS NSDQFSQATT PEAAGKFHGE SKREIDDEIQ  300
LSVMLESWLF DENDDLLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-251413758159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-251413758159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002378
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338450.10.0PREDICTED: myb-related protein 306-like
SwissprotP813923e-97MYB06_ANTMA; Myb-related protein 306
TrEMBLM0ZLH60.0M0ZLH6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000033470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-92myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]