PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002375
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 352aa    MW: 39279.7 Da    PI: 6.6585
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002375genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.83.3e-30189651128
                   NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ +glkk+Lvfy+gra +g ktdW+mhe+rl
  PGSC0003DMP400002375  18 ASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSdSTKCIGLKKSLVFYRGRAARGIKTDWMMHEFRL 96 
                           456899**************************************955666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.6551128IPR003441NAC domain
SuperFamilySSF1019415.49E-3510128IPR003441NAC domain
PfamPF023658.0E-132496IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MNHSLIFPCH TIFCPELAST GEKEWYFYCP RDRKYRNSAR PNRVTGAGFW KATGTDRPIY  60
SSDSTKCIGL KKSLVFYRGR AARGIKTDWM MHEFRLPTTN SESGPPKKFL DKNFPPNDSW  120
AICRIFKKTS SMANRALSYT WVNPLSEVAS PELFNQSANT HFISENVSSI TEAGSVLHLS  180
NNSDLLQGVS NVPSYKALNT MASRQSYLSS PSTDISYNFM FSSPEVSGQN SRCLLDANSM  240
FFNTSPGLIT DISKTSESID FDGPNQQLNS FSISSSQEMQ RSISMEDGEE GLRSNQTSTN  300
DNTEWENMRS VGFPFSLTAS LADEWKPSLS WDSPPCPSEI STSFSTNKCY N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-331413162168NO APICAL MERISTEM PROTEIN
1ut4_B1e-331413162168NO APICAL MERISTEM PROTEIN
1ut7_A1e-331413162168NO APICAL MERISTEM PROTEIN
1ut7_B1e-331413162168NO APICAL MERISTEM PROTEIN
4dul_A1e-331413162168NAC domain-containing protein 19
4dul_B1e-331413162168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002375
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338456.10.0PREDICTED: putative NAC domain-containing protein 94
TrEMBLM0ZLH30.0M0ZLH3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000033430.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-66NAC family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]