PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002325
Common NameLOC102604112
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family E2F/DP
Protein Properties Length: 374aa    MW: 41983.2 Da    PI: 8.6591
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002325genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP77.99.2e-252086171
               E2F_TDP  1 rkeksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                          rk+ksL+ll+++flkl+ ++ e  ++ l+++a++L    v  +rRRiYDi+N+Le+++++++k+kn++rw+g
  PGSC0003DMP400002325 20 RKDKSLGLLCSNFLKLCDREGEdSTIGLDNAADQL---GV--ERRRIYDIVNILESVGVLSRKAKNQYRWNG 86
                          79*****************9998************...**..****************************98 PP
2E2F_TDP69.83.1e-22143222170
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 
                           rkeksL +l+q+f+kl+++s+ + ++l+++a++L+ +      +k+k RR+YDi+NV+ +lnliek     + k+ +rw+
  PGSC0003DMP400002325 143 RKEKSLMILAQNFVKLFHCSDVDLISLDKAASTLLGDvhdpmAMKTKTRRLYDIANVFVSLNLIEKirspdNGKPVFRWI 222
                           79****************************************************************99999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-251887IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.23E-151984IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.1E-282086IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.3E-212186IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.6E-19140223IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.6E-23143223IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.1E-17144222IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.23E-11145222IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSSSLHTEDS QWKNPSIYSR KDKSLGLLCS NFLKLCDREG EDSTIGLDNA ADQLGVERRR  60
IYDIVNILES VGVLSRKAKN QYRWNGYSAI SKAVDLLKKE GLKDLSTVSS TCHNVSNVIA  120
CNNSDVKEKG EGKTAGSNKI DNRKEKSLMI LAQNFVKLFH CSDVDLISLD KAASTLLGDV  180
HDPMAMKTKT RRLYDIANVF VSLNLIEKIR SPDNGKPVFR WIAWNENPRS GSLAAAKSDD  240
STRRTFGAEI TNITPKRYRD DSSSDLMSNG LKRLKVAKDD ELKDKKQEIS AEQLNERGTK  300
DFVFGPFGPS SLPRSGISGK ENLKQIQNWE DLASKYHPQY QNKAANELFA HYVEAWESWQ  360
VEAANELHKQ HEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A6e-33192093222Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002325
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154130.0AC215413.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0189G15, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338510.10.0PREDICTED: E2F transcription factor-like E2FF isoform X1
TrEMBLM0ZLC50.0M0ZLC5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000032690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.25e-92DP-E2F-like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]