PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002288
Common NameLOC102594696
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 423aa    MW: 46504.1 Da    PI: 4.9118
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002288genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.46.2e-08342437
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                          ++C++++e ++  +C++++  lC +C ++ H+       H
  PGSC0003DMP400002288  3 PVCDLCSEARAVVYCKSDSARLCLQCDDYVHSPnlisrrH 42
                          79***************************99425555555 PP
2zf-B_box16.41.9e-054572330
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedCl 30
                            +C+++++++    C d    lCe C 
  PGSC0003DMP400002288 45 SFICDKCNSQPSVVRCMDEAISLCERCD 72
                          679************************7 PP
3CCT62.99.9e-22366409144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R +a++RY+eK+ktR F K+irY+sRKa+A++R RvKGrFvk+ 
  PGSC0003DMP400002288 366 RHEAKMRYNEKKKTRTFGKQIRYASRKARADTRRRVKGRFVKAG 409
                           899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.7E-9147IPR000315B-box-type zinc finger
PROSITE profilePS501199.371147IPR000315B-box-type zinc finger
PfamPF006431.2E-5344IPR000315B-box-type zinc finger
CDDcd000213.46E-6347No hitNo description
PROSITE profilePS5101714.624366408IPR010402CCT domain
PfamPF062031.1E-16366408IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDPVCDLCSE ARAVVYCKSD SARLCLQCDD YVHSPNLISR RHSRSFICDK CNSQPSVVRC  60
MDEAISLCER CDWDGNGCIG TGHRLKKLNP YTGCPSPDEF TKMLSQVLEM PIGTDTNFGS  120
FGNSFCSSLS INENNSSLET KVNEGSFVPS KLNELASNYK FEAAWAIPLE PNYLTSYHPD  180
LTPFSEGSAL SKKDCPIKDL GLQEGDVLSK GVDFDDVTLD FNCGYEILPN SLPTGFSDEN  240
KELDCLVMEK NSSVTGSNNV ETSHEATSSV QQEYMGLQSS QMSAAASSTN LLQTMSANAN  300
CMLMNSNCNG SIGALPFLPA PIHPSMSLSL SNITGESCAE QDCGLSPGFL NEAPWDLSLE  360
NCPQKRHEAK MRYNEKKKTR TFGKQIRYAS RKARADTRRR VKGRFVKAGE AYDYDPSETR  420
DF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002288
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2327010.0AC232701.2 Solanum lycopersicum chromosome 05 clone C05HBa0031K11, complete sequence.
GenBankAC2472930.0AC247293.4 Solanum lycopersicum strain Heinz 1706 chromosome 5 clone slm-48a1 map 5, complete sequence.
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356928.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like
TrEMBLM0ZL890.0M0ZL89_SOLTU; B-box zinc finger protein 12
STRINGPGSC0003DMT4000031980.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42311726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.18e-95B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]